Gene : Solyc00g203660.1 S. lycopersicum ITAG2.4
Defline:  (1 of 4) PTHR23321:SF31 - RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN-RELATED Description:  Ribulose bisphosphate carboxylase large chain (Fragment) (AHRD V1 ***- C9WX59_9GENT); contains Interpro domain(s) IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal
Genomic Order:  794 Name:  ? Solyc00g203660.1
Secondary Identifier:  ? PAC:36127619
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum CALVIN-PWY Solanum lycopersicum pathologic  
Slycopersicum PHOTOALL-PWY Solanum lycopersicum pathologic  
Slycopersicum PWY-5723 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc00g203660.1 0.5kb upstream 0.5kb upstream 1287 true SL2.50ch00: 18930106-18931392 Solanum lycopersicum
Solyc00g203660.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch00: 18930893-18931392 Solanum lycopersicum
Solyc00g203660.1 0.5kb downstream 0.5kb downstream 1287 true SL2.50ch00: 18929606-18930892 Solanum lycopersicum
Solyc00g203660.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch00: 18929606-18930105 Solanum lycopersicum
Solyc00g203660.1 1.0kb upstream 1.0kb upstream 1787 true SL2.50ch00: 18930106-18931892 Solanum lycopersicum
Solyc00g203660.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch00: 18930893-18931892 Solanum lycopersicum
Solyc00g203660.1 1.0kb downstream 1.0kb downstream 1787 true SL2.50ch00: 18929106-18930892 Solanum lycopersicum
Solyc00g203660.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch00: 18929106-18930105 Solanum lycopersicum
Solyc00g203660.1 2.0kb upstream 2.0kb upstream 2787 true SL2.50ch00: 18930106-18932892 Solanum lycopersicum
Solyc00g203660.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch00: 18930893-18932892 Solanum lycopersicum
Solyc00g203660.1 2.0kb downstream 2.0kb downstream 2787 true SL2.50ch00: 18928106-18930892 Solanum lycopersicum
Solyc00g203660.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch00: 18928106-18930105 Solanum lycopersicum
Solyc00g203660.1 5.0kb upstream 5.0kb upstream 5787 true SL2.50ch00: 18930106-18935892 Solanum lycopersicum
Solyc00g203660.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch00: 18930893-18935892 Solanum lycopersicum
Solyc00g203660.1 5.0kb downstream 5.0kb downstream 5787 true SL2.50ch00: 18925106-18930892 Solanum lycopersicum
Solyc00g203660.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch00: 18925106-18930105 Solanum lycopersicum
Solyc00g203660.1 10.0kb upstream 10.0kb upstream 10787 true SL2.50ch00: 18930106-18940892 Solanum lycopersicum
Solyc00g203660.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch00: 18930893-18940892 Solanum lycopersicum
Solyc00g203660.1 10.0kb downstream 10.0kb downstream 10787 true SL2.50ch00: 18920106-18930892 Solanum lycopersicum
Solyc00g203660.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch00: 18920106-18930105 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121478459 5263 Asterids View MSA
123751375 5271 Pentapetalae View MSA
122794662 5272 Eudicot View MSA
122051262 5273 Angiosperm View MSA
121312381 5274 Embryophyte View MSA
123349558 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain