Gene : AUR62017716 C. quinoa v1.0
Defline:  (1 of 2) PTHR11451:SF5 - THREONINE--TRNA LIGASE 1, CYTOPLASMIC-RELATED Genomic Order:  233
Name:  ? AUR62017716 Secondary Identifier:  ? PAC:36291537
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cquinoa TRNA-CHARGING-PWY Chenopodium quinoa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AUR62017716 0.5kb upstream 0.5kb upstream 15946 true C_Quinoa_Scaffold_3458: 3433883-3449828 Chenopodium quinoa
AUR62017716 0.5kb upstream 0.5kb upstream 500 false C_Quinoa_Scaffold_3458: 3449329-3449828 Chenopodium quinoa
AUR62017716 0.5kb downstream 0.5kb downstream 15946 true C_Quinoa_Scaffold_3458: 3433383-3449328 Chenopodium quinoa
AUR62017716 0.5kb downstream 0.5kb downstream 500 false C_Quinoa_Scaffold_3458: 3433383-3433882 Chenopodium quinoa
AUR62017716 1.0kb upstream 1.0kb upstream 16446 true C_Quinoa_Scaffold_3458: 3433883-3450328 Chenopodium quinoa
AUR62017716 1.0kb upstream 1.0kb upstream 1000 false C_Quinoa_Scaffold_3458: 3449329-3450328 Chenopodium quinoa
AUR62017716 1.0kb downstream 1.0kb downstream 16446 true C_Quinoa_Scaffold_3458: 3432883-3449328 Chenopodium quinoa
AUR62017716 1.0kb downstream 1.0kb downstream 1000 false C_Quinoa_Scaffold_3458: 3432883-3433882 Chenopodium quinoa
AUR62017716 2.0kb upstream 2.0kb upstream 17446 true C_Quinoa_Scaffold_3458: 3433883-3451328 Chenopodium quinoa
AUR62017716 2.0kb upstream 2.0kb upstream 2000 false C_Quinoa_Scaffold_3458: 3449329-3451328 Chenopodium quinoa
AUR62017716 2.0kb downstream 2.0kb downstream 17446 true C_Quinoa_Scaffold_3458: 3431883-3449328 Chenopodium quinoa
AUR62017716 2.0kb downstream 2.0kb downstream 2000 false C_Quinoa_Scaffold_3458: 3431883-3433882 Chenopodium quinoa
AUR62017716 5.0kb upstream 5.0kb upstream 20446 true C_Quinoa_Scaffold_3458: 3433883-3454328 Chenopodium quinoa
AUR62017716 5.0kb upstream 5.0kb upstream 5000 false C_Quinoa_Scaffold_3458: 3449329-3454328 Chenopodium quinoa
AUR62017716 5.0kb downstream 5.0kb downstream 20446 true C_Quinoa_Scaffold_3458: 3428883-3449328 Chenopodium quinoa
AUR62017716 5.0kb downstream 5.0kb downstream 5000 false C_Quinoa_Scaffold_3458: 3428883-3433882 Chenopodium quinoa
AUR62017716 10.0kb upstream 10.0kb upstream 25446 true C_Quinoa_Scaffold_3458: 3433883-3459328 Chenopodium quinoa
AUR62017716 10.0kb upstream 10.0kb upstream 10000 false C_Quinoa_Scaffold_3458: 3449329-3459328 Chenopodium quinoa
AUR62017716 10.0kb downstream 10.0kb downstream 25446 true C_Quinoa_Scaffold_3458: 3423883-3449328 Chenopodium quinoa
AUR62017716 10.0kb downstream 10.0kb downstream 10000 false C_Quinoa_Scaffold_3458: 3423883-3433882 Chenopodium quinoa

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123740183 5271 Pentapetalae View MSA
122787371 5272 Eudicot View MSA
122045647 5273 Angiosperm View MSA
123429084 5275 Viridiplantae View MSA
121345438 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain