Gene : AUR62004760 C. quinoa v1.0
Defline:  (1 of 2) PTHR31480//PTHR31480:SF2 - FAMILY NOT NAMED // PHYTOENE SYNTHASE, CHLOROPLASTIC Genomic Order:  32
Name:  ? AUR62004760 Secondary Identifier:  ? PAC:36288338
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cquinoa CAROTENOID-PWY Chenopodium quinoa pathologic  
Cquinoa PWY-6475 Chenopodium quinoa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AUR62004760 0.5kb upstream 0.5kb upstream 3829 true C_Quinoa_Scaffold_3820: 1522512-1526340 Chenopodium quinoa
AUR62004760 0.5kb upstream 0.5kb upstream 500 false C_Quinoa_Scaffold_3820: 1525841-1526340 Chenopodium quinoa
AUR62004760 0.5kb downstream 0.5kb downstream 3829 true C_Quinoa_Scaffold_3820: 1522012-1525840 Chenopodium quinoa
AUR62004760 0.5kb downstream 0.5kb downstream 500 false C_Quinoa_Scaffold_3820: 1522012-1522511 Chenopodium quinoa
AUR62004760 1.0kb upstream 1.0kb upstream 4329 true C_Quinoa_Scaffold_3820: 1522512-1526840 Chenopodium quinoa
AUR62004760 1.0kb upstream 1.0kb upstream 1000 false C_Quinoa_Scaffold_3820: 1525841-1526840 Chenopodium quinoa
AUR62004760 1.0kb downstream 1.0kb downstream 4329 true C_Quinoa_Scaffold_3820: 1521512-1525840 Chenopodium quinoa
AUR62004760 1.0kb downstream 1.0kb downstream 1000 false C_Quinoa_Scaffold_3820: 1521512-1522511 Chenopodium quinoa
AUR62004760 2.0kb upstream 2.0kb upstream 5329 true C_Quinoa_Scaffold_3820: 1522512-1527840 Chenopodium quinoa
AUR62004760 2.0kb upstream 2.0kb upstream 2000 false C_Quinoa_Scaffold_3820: 1525841-1527840 Chenopodium quinoa
AUR62004760 2.0kb downstream 2.0kb downstream 5329 true C_Quinoa_Scaffold_3820: 1520512-1525840 Chenopodium quinoa
AUR62004760 2.0kb downstream 2.0kb downstream 2000 false C_Quinoa_Scaffold_3820: 1520512-1522511 Chenopodium quinoa
AUR62004760 5.0kb upstream 5.0kb upstream 8329 true C_Quinoa_Scaffold_3820: 1522512-1530840 Chenopodium quinoa
AUR62004760 5.0kb upstream 5.0kb upstream 5000 false C_Quinoa_Scaffold_3820: 1525841-1530840 Chenopodium quinoa
AUR62004760 5.0kb downstream 5.0kb downstream 8329 true C_Quinoa_Scaffold_3820: 1517512-1525840 Chenopodium quinoa
AUR62004760 5.0kb downstream 5.0kb downstream 5000 false C_Quinoa_Scaffold_3820: 1517512-1522511 Chenopodium quinoa
AUR62004760 10.0kb upstream 10.0kb upstream 13329 true C_Quinoa_Scaffold_3820: 1522512-1535840 Chenopodium quinoa
AUR62004760 10.0kb upstream 10.0kb upstream 10000 false C_Quinoa_Scaffold_3820: 1525841-1535840 Chenopodium quinoa
AUR62004760 10.0kb downstream 10.0kb downstream 13329 true C_Quinoa_Scaffold_3820: 1512512-1525840 Chenopodium quinoa
AUR62004760 10.0kb downstream 10.0kb downstream 10000 false C_Quinoa_Scaffold_3820: 1512512-1522511 Chenopodium quinoa

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041269 5273 Angiosperm View MSA
123743557 5271 Pentapetalae View MSA
122795955 5272 Eudicot View MSA
121345575 5274 Embryophyte View MSA
123426823 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain