Protein Domain : IPR003178

Type:  Family Name:  Methyl-coenzyme M reductase, gamma subunit
Description:  Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry [].MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. This entry represents the gamma subunit, which has a complex alpha-helical/beta-sheet topology. Short Name:  Me_CoM_Rdtase_gsu

0 Child Features

1 Contains

DB identifier Type Name
IPR009024 Domain Methyl-coenzyme M reductase, ferredoxin-like fold

5 Cross Referencess

Identifier
PF02240
PIRSF000264
PD005845
TIGR03259
G3DSA:3.90.320.20

0 Found In

2 GO Annotations

GO Term Gene Name
GO:0050524 IPR003178
GO:0015948 IPR003178

2 Ontology Annotations

GO Term Gene Name
GO:0050524 IPR003178
GO:0015948 IPR003178

0 Parent Features

21 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
38993 C1MMY2 PAC:27346971 Micromonas pusilla CCMP1545 521  
Glyma.11G214900.1.p I1LMA6 PAC:30529216 Glycine max 136  
Brdisv1BdTR10C1004237m.p PAC:35405065 Brachypodium distachyon BdTR10c 616  
Stapi.0469s0007.1.p PAC:39841719 Stanleya pinnata 308  
Brasy4G361600.1.p PAC:40086351 Brachypodium sylvaticum 253  
MD00G1152300 PAC:40122313 Malus domestica 714  
Glyma.11G214900.1.p I1LMA6 PAC:41128251 Glycine max 136  
GlysoPI483463.11G197300.1.p A0A0B2QRA6 PAC:41203206 Glycine soja 136  
GlymaLee.11G197300.1.p I1LMA6 PAC:41296417 Glycine max Lee 136  
Sphmag08G103400.1.p PAC:41925240 Sphagnum magellanicum 111  
Thecc.10G156600.1.p PAC:42024508 Theobroma cacao 1241  
Thecc.10G156900.1.p A0A061FYD1 PAC:42025179 Theobroma cacao 1461  
CepurR40.5G171300.1.p PAC:43019378 Ceratodon purpureus R40 197  
CepurR40.7G025900.1.p PAC:43027730 Ceratodon purpureus R40 118  
CepurR40.8G146400.1.p PAC:42991549 Ceratodon purpureus R40 51  
CepurR40.10G055200.1.p PAC:42998197 Ceratodon purpureus R40 99  
CepurGG1.UG073600.1.p PAC:43050985 Ceratodon purpureus GG1 118  
CepurGG1.UG243300.1.p PAC:43051681 Ceratodon purpureus GG1 118  
CepurGG1.10G052000.1.p PAC:43060770 Ceratodon purpureus GG1 99  
CepurGG1.5G164500.1.p PAC:43041048 Ceratodon purpureus GG1 197  
Pl01G0000169900.1.v1 PAC:44365741 Phaseolus lunatus 155  

4 Publications

First Author Title Year Journal Volume Pages PubMed ID
            9367957
            11491299
            16260307
            16234924