Gene : AUR62028546 C. quinoa v1.0
Defline:  (1 of 2) PTHR11766:SF0 - TYROSINE--TRNA LIGASE, MITOCHONDRIAL Genomic Order:  135
Name:  ? AUR62028546 Secondary Identifier:  ? PAC:36296047
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cquinoa TRNA-CHARGING-PWY Chenopodium quinoa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AUR62028546 0.5kb upstream 0.5kb upstream 1994 true C_Quinoa_Scaffold_3100: 6248760-6250753 Chenopodium quinoa
AUR62028546 0.5kb upstream 0.5kb upstream 500 false C_Quinoa_Scaffold_3100: 6248760-6249259 Chenopodium quinoa
AUR62028546 0.5kb downstream 0.5kb downstream 1994 true C_Quinoa_Scaffold_3100: 6249260-6251253 Chenopodium quinoa
AUR62028546 0.5kb downstream 0.5kb downstream 500 false C_Quinoa_Scaffold_3100: 6250754-6251253 Chenopodium quinoa
AUR62028546 1.0kb upstream 1.0kb upstream 2494 true C_Quinoa_Scaffold_3100: 6248260-6250753 Chenopodium quinoa
AUR62028546 1.0kb upstream 1.0kb upstream 1000 false C_Quinoa_Scaffold_3100: 6248260-6249259 Chenopodium quinoa
AUR62028546 1.0kb downstream 1.0kb downstream 2494 true C_Quinoa_Scaffold_3100: 6249260-6251753 Chenopodium quinoa
AUR62028546 1.0kb downstream 1.0kb downstream 1000 false C_Quinoa_Scaffold_3100: 6250754-6251753 Chenopodium quinoa
AUR62028546 2.0kb upstream 2.0kb upstream 3494 true C_Quinoa_Scaffold_3100: 6247260-6250753 Chenopodium quinoa
AUR62028546 2.0kb upstream 2.0kb upstream 2000 false C_Quinoa_Scaffold_3100: 6247260-6249259 Chenopodium quinoa
AUR62028546 2.0kb downstream 2.0kb downstream 3494 true C_Quinoa_Scaffold_3100: 6249260-6252753 Chenopodium quinoa
AUR62028546 2.0kb downstream 2.0kb downstream 2000 false C_Quinoa_Scaffold_3100: 6250754-6252753 Chenopodium quinoa
AUR62028546 5.0kb upstream 5.0kb upstream 6494 true C_Quinoa_Scaffold_3100: 6244260-6250753 Chenopodium quinoa
AUR62028546 5.0kb upstream 5.0kb upstream 5000 false C_Quinoa_Scaffold_3100: 6244260-6249259 Chenopodium quinoa
AUR62028546 5.0kb downstream 5.0kb downstream 6494 true C_Quinoa_Scaffold_3100: 6249260-6255753 Chenopodium quinoa
AUR62028546 5.0kb downstream 5.0kb downstream 5000 false C_Quinoa_Scaffold_3100: 6250754-6255753 Chenopodium quinoa
AUR62028546 10.0kb upstream 10.0kb upstream 11494 true C_Quinoa_Scaffold_3100: 6239260-6250753 Chenopodium quinoa
AUR62028546 10.0kb upstream 10.0kb upstream 10000 false C_Quinoa_Scaffold_3100: 6239260-6249259 Chenopodium quinoa
AUR62028546 10.0kb downstream 10.0kb downstream 11494 true C_Quinoa_Scaffold_3100: 6249260-6260753 Chenopodium quinoa
AUR62028546 10.0kb downstream 10.0kb downstream 10000 false C_Quinoa_Scaffold_3100: 6250754-6260753 Chenopodium quinoa

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123740976 5271 Pentapetalae View MSA
122788187 5272 Eudicot View MSA
122042111 5273 Angiosperm View MSA
121344516 5274 Embryophyte View MSA
123424944 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain