Gene : Phvul.001G043900 P. vulgaris v2.1
Defline:  (1 of 1) K16274 - E3 ubiquitin-protein ligase AIP2 [EC:6.3.2.19] (AIP2) Genomic Order:  404
Name:  ? Phvul.001G043900 Secondary Identifier:  ? PAC:37168406
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-7511 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G043900 0.5kb upstream 0.5kb upstream 3850 true Chr01: 3910690-3914539 Phaseolus vulgaris
Phvul.001G043900 0.5kb upstream 0.5kb upstream 500 false Chr01: 3914040-3914539 Phaseolus vulgaris
Phvul.001G043900 0.5kb downstream 0.5kb downstream 3850 true Chr01: 3910190-3914039 Phaseolus vulgaris
Phvul.001G043900 0.5kb downstream 0.5kb downstream 500 false Chr01: 3910190-3910689 Phaseolus vulgaris
Phvul.001G043900 1.0kb upstream 1.0kb upstream 4350 true Chr01: 3910690-3915039 Phaseolus vulgaris
Phvul.001G043900 1.0kb upstream 1.0kb upstream 1000 false Chr01: 3914040-3915039 Phaseolus vulgaris
Phvul.001G043900 1.0kb downstream 1.0kb downstream 4350 true Chr01: 3909690-3914039 Phaseolus vulgaris
Phvul.001G043900 1.0kb downstream 1.0kb downstream 1000 false Chr01: 3909690-3910689 Phaseolus vulgaris
Phvul.001G043900 2.0kb upstream 2.0kb upstream 5350 true Chr01: 3910690-3916039 Phaseolus vulgaris
Phvul.001G043900 2.0kb upstream 2.0kb upstream 2000 false Chr01: 3914040-3916039 Phaseolus vulgaris
Phvul.001G043900 2.0kb downstream 2.0kb downstream 5350 true Chr01: 3908690-3914039 Phaseolus vulgaris
Phvul.001G043900 2.0kb downstream 2.0kb downstream 2000 false Chr01: 3908690-3910689 Phaseolus vulgaris
Phvul.001G043900 5.0kb upstream 5.0kb upstream 8350 true Chr01: 3910690-3919039 Phaseolus vulgaris
Phvul.001G043900 5.0kb upstream 5.0kb upstream 5000 false Chr01: 3914040-3919039 Phaseolus vulgaris
Phvul.001G043900 5.0kb downstream 5.0kb downstream 8350 true Chr01: 3905690-3914039 Phaseolus vulgaris
Phvul.001G043900 5.0kb downstream 5.0kb downstream 5000 false Chr01: 3905690-3910689 Phaseolus vulgaris
Phvul.001G043900 10.0kb upstream 10.0kb upstream 13350 true Chr01: 3910690-3924039 Phaseolus vulgaris
Phvul.001G043900 10.0kb upstream 10.0kb upstream 10000 false Chr01: 3914040-3924039 Phaseolus vulgaris
Phvul.001G043900 10.0kb downstream 10.0kb downstream 13350 true Chr01: 3900690-3914039 Phaseolus vulgaris
Phvul.001G043900 10.0kb downstream 10.0kb downstream 10000 false Chr01: 3900690-3910689 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026169 5273 Angiosperm View MSA
122312230 5265 Fabidae View MSA
124060743 5270 Rosid View MSA
123738156 5271 Pentapetalae View MSA
122787757 5272 Eudicot View MSA
123429130 5275 Viridiplantae View MSA
121350344 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 34.5475 0.0 89.3149 High High
cufflinks 13.4537 0.0 36.0519    
cufflinks 14.7024 0.0 39.0456    
cufflinks 32.9877 0.0 85.275   High
cufflinks 11.0162 0.0 30.139   Low
cufflinks 10.0191 0.0 27.4952   Low
cufflinks 14.4401 0.0 38.4486    
cufflinks 18.1161 0.0 47.5009    
cufflinks 13.1037 0.0 35.1552    
cufflinks 23.8655 0.0 61.9973    
cufflinks 15.0315 0.0 40.0685    

0 Strain