Gene : Phvul.001G048500 P. vulgaris v2.1
Defline:  (1 of 65) 3.1.4.46 - Glycerophosphodiester phosphodiesterase / Glycerophosphoryl diester phosphodiesterase Genomic Order:  489
Name:  ? Phvul.001G048500 Secondary Identifier:  ? PAC:37168442
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-7409 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G048500 0.5kb upstream 0.5kb upstream 3112 true Chr01: 5124234-5127345 Phaseolus vulgaris
Phvul.001G048500 0.5kb upstream 0.5kb upstream 500 false Chr01: 5126846-5127345 Phaseolus vulgaris
Phvul.001G048500 0.5kb downstream 0.5kb downstream 3112 true Chr01: 5123734-5126845 Phaseolus vulgaris
Phvul.001G048500 0.5kb downstream 0.5kb downstream 500 false Chr01: 5123734-5124233 Phaseolus vulgaris
Phvul.001G048500 1.0kb upstream 1.0kb upstream 3612 true Chr01: 5124234-5127845 Phaseolus vulgaris
Phvul.001G048500 1.0kb upstream 1.0kb upstream 1000 false Chr01: 5126846-5127845 Phaseolus vulgaris
Phvul.001G048500 1.0kb downstream 1.0kb downstream 3612 true Chr01: 5123234-5126845 Phaseolus vulgaris
Phvul.001G048500 1.0kb downstream 1.0kb downstream 1000 false Chr01: 5123234-5124233 Phaseolus vulgaris
Phvul.001G048500 2.0kb upstream 2.0kb upstream 4612 true Chr01: 5124234-5128845 Phaseolus vulgaris
Phvul.001G048500 2.0kb upstream 2.0kb upstream 2000 false Chr01: 5126846-5128845 Phaseolus vulgaris
Phvul.001G048500 2.0kb downstream 2.0kb downstream 4612 true Chr01: 5122234-5126845 Phaseolus vulgaris
Phvul.001G048500 2.0kb downstream 2.0kb downstream 2000 false Chr01: 5122234-5124233 Phaseolus vulgaris
Phvul.001G048500 5.0kb upstream 5.0kb upstream 7612 true Chr01: 5124234-5131845 Phaseolus vulgaris
Phvul.001G048500 5.0kb upstream 5.0kb upstream 5000 false Chr01: 5126846-5131845 Phaseolus vulgaris
Phvul.001G048500 5.0kb downstream 5.0kb downstream 7612 true Chr01: 5119234-5126845 Phaseolus vulgaris
Phvul.001G048500 5.0kb downstream 5.0kb downstream 5000 false Chr01: 5119234-5124233 Phaseolus vulgaris
Phvul.001G048500 10.0kb upstream 10.0kb upstream 12612 true Chr01: 5124234-5136845 Phaseolus vulgaris
Phvul.001G048500 10.0kb upstream 10.0kb upstream 10000 false Chr01: 5126846-5136845 Phaseolus vulgaris
Phvul.001G048500 10.0kb downstream 10.0kb downstream 12612 true Chr01: 5114234-5126845 Phaseolus vulgaris
Phvul.001G048500 10.0kb downstream 10.0kb downstream 10000 false Chr01: 5114234-5124233 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314435 5265 Fabidae View MSA
124074937 5270 Rosid View MSA
123753765 5271 Pentapetalae View MSA
122797900 5272 Eudicot View MSA
122051692 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0365439 0.0 0.178311 Low High
cufflinks 5.94605E-4 0.0 0.00991348 Low  
cufflinks 0.00247113 0.0 0.0211136 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 7.49719E-4 0.0 0.0117144 Low  
cufflinks 4.93754E-5 0.0 0.00272257 Low Low
cufflinks 0.00112525 0.0 0.0140991 Low  
cufflinks 6.4584E-5 0.0 0.00301094 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.00973773 0.0 0.0556228 Low High
cufflinks 0.00209416 0.0 0.0202168 Low  

0 Strain