Gene : Phvul.001G036000 P. vulgaris v2.1
Defline:  (1 of 1) K12627 - U6 snRNA-associated Sm-like protein LSm8 (LSM8) Genomic Order:  363
Name:  ? Phvul.001G036000 Secondary Identifier:  ? PAC:37171128
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G036000 0.5kb upstream 0.5kb upstream 4564 true Chr01: 3362272-3366835 Phaseolus vulgaris
Phvul.001G036000 0.5kb upstream 0.5kb upstream 500 false Chr01: 3366336-3366835 Phaseolus vulgaris
Phvul.001G036000 0.5kb downstream 0.5kb downstream 4564 true Chr01: 3361772-3366335 Phaseolus vulgaris
Phvul.001G036000 0.5kb downstream 0.5kb downstream 500 false Chr01: 3361772-3362271 Phaseolus vulgaris
Phvul.001G036000 1.0kb upstream 1.0kb upstream 5064 true Chr01: 3362272-3367335 Phaseolus vulgaris
Phvul.001G036000 1.0kb upstream 1.0kb upstream 1000 false Chr01: 3366336-3367335 Phaseolus vulgaris
Phvul.001G036000 1.0kb downstream 1.0kb downstream 5064 true Chr01: 3361272-3366335 Phaseolus vulgaris
Phvul.001G036000 1.0kb downstream 1.0kb downstream 1000 false Chr01: 3361272-3362271 Phaseolus vulgaris
Phvul.001G036000 2.0kb upstream 2.0kb upstream 6064 true Chr01: 3362272-3368335 Phaseolus vulgaris
Phvul.001G036000 2.0kb upstream 2.0kb upstream 2000 false Chr01: 3366336-3368335 Phaseolus vulgaris
Phvul.001G036000 2.0kb downstream 2.0kb downstream 6064 true Chr01: 3360272-3366335 Phaseolus vulgaris
Phvul.001G036000 2.0kb downstream 2.0kb downstream 2000 false Chr01: 3360272-3362271 Phaseolus vulgaris
Phvul.001G036000 5.0kb upstream 5.0kb upstream 9064 true Chr01: 3362272-3371335 Phaseolus vulgaris
Phvul.001G036000 5.0kb upstream 5.0kb upstream 5000 false Chr01: 3366336-3371335 Phaseolus vulgaris
Phvul.001G036000 5.0kb downstream 5.0kb downstream 9064 true Chr01: 3357272-3366335 Phaseolus vulgaris
Phvul.001G036000 5.0kb downstream 5.0kb downstream 5000 false Chr01: 3357272-3362271 Phaseolus vulgaris
Phvul.001G036000 10.0kb upstream 10.0kb upstream 14064 true Chr01: 3362272-3376335 Phaseolus vulgaris
Phvul.001G036000 10.0kb upstream 10.0kb upstream 10000 false Chr01: 3366336-3376335 Phaseolus vulgaris
Phvul.001G036000 10.0kb downstream 10.0kb downstream 14064 true Chr01: 3352272-3366335 Phaseolus vulgaris
Phvul.001G036000 10.0kb downstream 10.0kb downstream 10000 false Chr01: 3352272-3362271 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309330 5265 Fabidae View MSA
124065490 5270 Rosid View MSA
123746583 5271 Pentapetalae View MSA
122790911 5272 Eudicot View MSA
122047376 5273 Angiosperm View MSA
121345088 5274 Embryophyte View MSA
123423767 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.4152 0.0 56.435    
cufflinks 21.4043 0.0 58.9291    
cufflinks 15.0063 0.0 42.6051    
cufflinks 22.0281 0.0 60.6429    
cufflinks 18.8914 0.0 52.8155    
cufflinks 9.13965 0.0 27.4345   Low
cufflinks 14.31 0.0 40.8072    
cufflinks 19.4287 0.0 53.7202    
cufflinks 13.2031 0.0 38.0293    
cufflinks 13.678 0.0 39.3137    
cufflinks 22.6045 0.0 62.0798   High

0 Strain