Gene : Phvul.001G041700 P. vulgaris v2.1
Defline:  (1 of 2) PTHR32370:SF7 - BTB/POZ DOMAIN-CONTAINING PROTEIN NPY1 Genomic Order:  427
Name:  ? Phvul.001G041700 Secondary Identifier:  ? PAC:37167832
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G041700 0.5kb upstream 0.5kb upstream 5441 true Chr01: 4239451-4244891 Phaseolus vulgaris
Phvul.001G041700 0.5kb upstream 0.5kb upstream 500 false Chr01: 4244392-4244891 Phaseolus vulgaris
Phvul.001G041700 0.5kb downstream 0.5kb downstream 5441 true Chr01: 4238951-4244391 Phaseolus vulgaris
Phvul.001G041700 0.5kb downstream 0.5kb downstream 500 false Chr01: 4238951-4239450 Phaseolus vulgaris
Phvul.001G041700 1.0kb upstream 1.0kb upstream 5941 true Chr01: 4239451-4245391 Phaseolus vulgaris
Phvul.001G041700 1.0kb upstream 1.0kb upstream 1000 false Chr01: 4244392-4245391 Phaseolus vulgaris
Phvul.001G041700 1.0kb downstream 1.0kb downstream 5941 true Chr01: 4238451-4244391 Phaseolus vulgaris
Phvul.001G041700 1.0kb downstream 1.0kb downstream 1000 false Chr01: 4238451-4239450 Phaseolus vulgaris
Phvul.001G041700 2.0kb upstream 2.0kb upstream 6941 true Chr01: 4239451-4246391 Phaseolus vulgaris
Phvul.001G041700 2.0kb upstream 2.0kb upstream 2000 false Chr01: 4244392-4246391 Phaseolus vulgaris
Phvul.001G041700 2.0kb downstream 2.0kb downstream 6941 true Chr01: 4237451-4244391 Phaseolus vulgaris
Phvul.001G041700 2.0kb downstream 2.0kb downstream 2000 false Chr01: 4237451-4239450 Phaseolus vulgaris
Phvul.001G041700 5.0kb upstream 5.0kb upstream 9941 true Chr01: 4239451-4249391 Phaseolus vulgaris
Phvul.001G041700 5.0kb upstream 5.0kb upstream 5000 false Chr01: 4244392-4249391 Phaseolus vulgaris
Phvul.001G041700 5.0kb downstream 5.0kb downstream 9941 true Chr01: 4234451-4244391 Phaseolus vulgaris
Phvul.001G041700 5.0kb downstream 5.0kb downstream 5000 false Chr01: 4234451-4239450 Phaseolus vulgaris
Phvul.001G041700 10.0kb upstream 10.0kb upstream 14941 true Chr01: 4239451-4254391 Phaseolus vulgaris
Phvul.001G041700 10.0kb upstream 10.0kb upstream 10000 false Chr01: 4244392-4254391 Phaseolus vulgaris
Phvul.001G041700 10.0kb downstream 10.0kb downstream 14941 true Chr01: 4229451-4244391 Phaseolus vulgaris
Phvul.001G041700 10.0kb downstream 10.0kb downstream 10000 false Chr01: 4229451-4239450 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304578 5265 Fabidae View MSA
124067835 5270 Rosid View MSA
123737870 5271 Pentapetalae View MSA
122787128 5272 Eudicot View MSA
122043387 5273 Angiosperm View MSA
121310115 5274 Embryophyte View MSA
123347692 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.86884 0.0 10.8843    
cufflinks 5.74294 0.0 15.5999    
cufflinks 9.20884 0.0 24.1349   High
cufflinks 11.429 0.0 29.7938   High
cufflinks 5.41325 0.0 14.8643    
cufflinks 11.6642 0.0 30.2975   High
cufflinks 2.70978 0.0 7.89338   Low
cufflinks 2.23563 0.0 6.62828   Low
cufflinks 2.43196 0.0 7.18653   Low
cufflinks 4.24229 0.0 11.8555    
cufflinks 6.41702 0.0 17.338    

0 Strain