Gene : Phvul.001G041800 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11941:SF96 - 3-HYDROXYISOBUTYRYL-COA HYDROLASE-LIKE PROTEIN 2, MITOCHONDRIAL Genomic Order:  426
Name:  ? Phvul.001G041800 Secondary Identifier:  ? PAC:37169461
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-7574 Phaseolus vulgaris pathologic  
Pvulgaris VALDEG-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G041800 0.5kb upstream 0.5kb upstream 11790 true Chr01: 4227182-4238971 Phaseolus vulgaris
Phvul.001G041800 0.5kb upstream 0.5kb upstream 500 false Chr01: 4238472-4238971 Phaseolus vulgaris
Phvul.001G041800 0.5kb downstream 0.5kb downstream 11790 true Chr01: 4226682-4238471 Phaseolus vulgaris
Phvul.001G041800 0.5kb downstream 0.5kb downstream 500 false Chr01: 4226682-4227181 Phaseolus vulgaris
Phvul.001G041800 1.0kb upstream 1.0kb upstream 12290 true Chr01: 4227182-4239471 Phaseolus vulgaris
Phvul.001G041800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 4238472-4239471 Phaseolus vulgaris
Phvul.001G041800 1.0kb downstream 1.0kb downstream 12290 true Chr01: 4226182-4238471 Phaseolus vulgaris
Phvul.001G041800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 4226182-4227181 Phaseolus vulgaris
Phvul.001G041800 2.0kb upstream 2.0kb upstream 13290 true Chr01: 4227182-4240471 Phaseolus vulgaris
Phvul.001G041800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 4238472-4240471 Phaseolus vulgaris
Phvul.001G041800 2.0kb downstream 2.0kb downstream 13290 true Chr01: 4225182-4238471 Phaseolus vulgaris
Phvul.001G041800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 4225182-4227181 Phaseolus vulgaris
Phvul.001G041800 5.0kb upstream 5.0kb upstream 16290 true Chr01: 4227182-4243471 Phaseolus vulgaris
Phvul.001G041800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 4238472-4243471 Phaseolus vulgaris
Phvul.001G041800 5.0kb downstream 5.0kb downstream 16290 true Chr01: 4222182-4238471 Phaseolus vulgaris
Phvul.001G041800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 4222182-4227181 Phaseolus vulgaris
Phvul.001G041800 10.0kb upstream 10.0kb upstream 21290 true Chr01: 4227182-4248471 Phaseolus vulgaris
Phvul.001G041800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 4238472-4248471 Phaseolus vulgaris
Phvul.001G041800 10.0kb downstream 10.0kb downstream 21290 true Chr01: 4217182-4238471 Phaseolus vulgaris
Phvul.001G041800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 4217182-4227181 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304938 5265 Fabidae View MSA
124062114 5270 Rosid View MSA
123739343 5271 Pentapetalae View MSA
122794700 5272 Eudicot View MSA
122041951 5273 Angiosperm View MSA
121350478 5274 Embryophyte View MSA
123428448 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.4939 0.0 41.5783    
cufflinks 15.849 0.0 47.0681   High
cufflinks 7.24723 0.0 25.5975   Low
cufflinks 14.2054 0.0 42.4048    
cufflinks 10.9485 0.0 35.4017    
cufflinks 8.952 0.0 28.615    
cufflinks 8.57824 0.0 27.8696   Low
cufflinks 10.4028 0.0 33.3321    
cufflinks 10.5431 0.0 33.0971    
cufflinks 15.8393 0.0 47.2825   High
cufflinks 10.5437 0.0 33.9813    

0 Strain