Gene : Phvul.001G023800 P. vulgaris v2.1
Defline:  (1 of 1) PTHR13547:SF3 - PROTEINACEOUS RNASE P 1, CHLOROPLASTIC/MITOCHONDRIAL Genomic Order:  241
Name:  ? Phvul.001G023800 Secondary Identifier:  ? PAC:37171036
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G023800 0.5kb upstream 0.5kb upstream 5052 true Chr01: 2008598-2013649 Phaseolus vulgaris
Phvul.001G023800 0.5kb upstream 0.5kb upstream 500 false Chr01: 2008598-2009097 Phaseolus vulgaris
Phvul.001G023800 0.5kb downstream 0.5kb downstream 5052 true Chr01: 2009098-2014149 Phaseolus vulgaris
Phvul.001G023800 0.5kb downstream 0.5kb downstream 500 false Chr01: 2013650-2014149 Phaseolus vulgaris
Phvul.001G023800 1.0kb upstream 1.0kb upstream 5552 true Chr01: 2008098-2013649 Phaseolus vulgaris
Phvul.001G023800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 2008098-2009097 Phaseolus vulgaris
Phvul.001G023800 1.0kb downstream 1.0kb downstream 5552 true Chr01: 2009098-2014649 Phaseolus vulgaris
Phvul.001G023800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 2013650-2014649 Phaseolus vulgaris
Phvul.001G023800 2.0kb upstream 2.0kb upstream 6552 true Chr01: 2007098-2013649 Phaseolus vulgaris
Phvul.001G023800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 2007098-2009097 Phaseolus vulgaris
Phvul.001G023800 2.0kb downstream 2.0kb downstream 6552 true Chr01: 2009098-2015649 Phaseolus vulgaris
Phvul.001G023800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 2013650-2015649 Phaseolus vulgaris
Phvul.001G023800 5.0kb upstream 5.0kb upstream 9552 true Chr01: 2004098-2013649 Phaseolus vulgaris
Phvul.001G023800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 2004098-2009097 Phaseolus vulgaris
Phvul.001G023800 5.0kb downstream 5.0kb downstream 9552 true Chr01: 2009098-2018649 Phaseolus vulgaris
Phvul.001G023800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 2013650-2018649 Phaseolus vulgaris
Phvul.001G023800 10.0kb upstream 10.0kb upstream 14552 true Chr01: 1999098-2013649 Phaseolus vulgaris
Phvul.001G023800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 1999098-2009097 Phaseolus vulgaris
Phvul.001G023800 10.0kb downstream 10.0kb downstream 14552 true Chr01: 2009098-2023649 Phaseolus vulgaris
Phvul.001G023800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 2013650-2023649 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299147 5265 Fabidae View MSA
124064594 5270 Rosid View MSA
123746392 5271 Pentapetalae View MSA
122788883 5272 Eudicot View MSA
122048517 5273 Angiosperm View MSA
121348403 5274 Embryophyte View MSA
123426144 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.05181 0.0 8.44135   Low
cufflinks 5.4105 0.0 20.4793    
cufflinks 15.8658 0.0 56.742   High
cufflinks 4.11037 0.0 14.1549    
cufflinks 5.66668 0.0 18.2085    
cufflinks 9.36367 0.0 31.4237   High
cufflinks 3.02461 0.0 12.8369    
cufflinks 3.85085 0.0 15.869    
cufflinks 2.53544 0.0 12.4127    
cufflinks 3.60394 0.0 14.7931    
cufflinks 4.02795 0.0 16.7689    

0 Strain