Gene : Phvul.001G023300 P. vulgaris v2.1
Defline:  (1 of 4) PTHR14155//PTHR14155:SF72 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Genomic Order:  236
Name:  ? Phvul.001G023300 Secondary Identifier:  ? PAC:37170320
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G023300 0.5kb upstream 0.5kb upstream 5884 true Chr01: 1942169-1948052 Phaseolus vulgaris
Phvul.001G023300 0.5kb upstream 0.5kb upstream 500 false Chr01: 1947553-1948052 Phaseolus vulgaris
Phvul.001G023300 0.5kb downstream 0.5kb downstream 5884 true Chr01: 1941669-1947552 Phaseolus vulgaris
Phvul.001G023300 0.5kb downstream 0.5kb downstream 500 false Chr01: 1941669-1942168 Phaseolus vulgaris
Phvul.001G023300 1.0kb upstream 1.0kb upstream 6384 true Chr01: 1942169-1948552 Phaseolus vulgaris
Phvul.001G023300 1.0kb upstream 1.0kb upstream 1000 false Chr01: 1947553-1948552 Phaseolus vulgaris
Phvul.001G023300 1.0kb downstream 1.0kb downstream 6384 true Chr01: 1941169-1947552 Phaseolus vulgaris
Phvul.001G023300 1.0kb downstream 1.0kb downstream 1000 false Chr01: 1941169-1942168 Phaseolus vulgaris
Phvul.001G023300 2.0kb upstream 2.0kb upstream 7384 true Chr01: 1942169-1949552 Phaseolus vulgaris
Phvul.001G023300 2.0kb upstream 2.0kb upstream 2000 false Chr01: 1947553-1949552 Phaseolus vulgaris
Phvul.001G023300 2.0kb downstream 2.0kb downstream 7384 true Chr01: 1940169-1947552 Phaseolus vulgaris
Phvul.001G023300 2.0kb downstream 2.0kb downstream 2000 false Chr01: 1940169-1942168 Phaseolus vulgaris
Phvul.001G023300 5.0kb upstream 5.0kb upstream 10384 true Chr01: 1942169-1952552 Phaseolus vulgaris
Phvul.001G023300 5.0kb upstream 5.0kb upstream 5000 false Chr01: 1947553-1952552 Phaseolus vulgaris
Phvul.001G023300 5.0kb downstream 5.0kb downstream 10384 true Chr01: 1937169-1947552 Phaseolus vulgaris
Phvul.001G023300 5.0kb downstream 5.0kb downstream 5000 false Chr01: 1937169-1942168 Phaseolus vulgaris
Phvul.001G023300 10.0kb upstream 10.0kb upstream 15384 true Chr01: 1942169-1957552 Phaseolus vulgaris
Phvul.001G023300 10.0kb upstream 10.0kb upstream 10000 false Chr01: 1947553-1957552 Phaseolus vulgaris
Phvul.001G023300 10.0kb downstream 10.0kb downstream 15384 true Chr01: 1932169-1947552 Phaseolus vulgaris
Phvul.001G023300 10.0kb downstream 10.0kb downstream 10000 false Chr01: 1932169-1942168 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304615 5265 Fabidae View MSA
124061889 5270 Rosid View MSA
123751364 5271 Pentapetalae View MSA
122793070 5272 Eudicot View MSA
122041627 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121351500 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.3265 0.0 37.0773    
cufflinks 9.17452 0.0 24.1263   Low
cufflinks 18.3898 0.0 47.5645    
cufflinks 7.37537 0.0 19.7862   Low
cufflinks 16.9264 0.0 43.7551    
cufflinks 23.2099 0.0 60.2862    
cufflinks 26.0182 0.0 67.824   High
cufflinks 22.8778 0.0 59.4572    
cufflinks 23.9136 0.0 62.0934    
cufflinks 14.5325 0.0 37.6057    
cufflinks 19.4584 0.0 50.3176    

0 Strain