Gene : Phvul.001G027300 P. vulgaris v2.1
Defline:  (1 of 2) PTHR23315:SF64 - ARM REPEAT SUPERFAMILY PROTEIN-RELATED Genomic Order:  276
Name:  ? Phvul.001G027300 Secondary Identifier:  ? PAC:37168812
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-7511 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G027300 0.5kb upstream 0.5kb upstream 2594 true Chr01: 2427689-2430282 Phaseolus vulgaris
Phvul.001G027300 0.5kb upstream 0.5kb upstream 500 false Chr01: 2427689-2428188 Phaseolus vulgaris
Phvul.001G027300 0.5kb downstream 0.5kb downstream 2594 true Chr01: 2428189-2430782 Phaseolus vulgaris
Phvul.001G027300 0.5kb downstream 0.5kb downstream 500 false Chr01: 2430283-2430782 Phaseolus vulgaris
Phvul.001G027300 1.0kb upstream 1.0kb upstream 3094 true Chr01: 2427189-2430282 Phaseolus vulgaris
Phvul.001G027300 1.0kb upstream 1.0kb upstream 1000 false Chr01: 2427189-2428188 Phaseolus vulgaris
Phvul.001G027300 1.0kb downstream 1.0kb downstream 3094 true Chr01: 2428189-2431282 Phaseolus vulgaris
Phvul.001G027300 1.0kb downstream 1.0kb downstream 1000 false Chr01: 2430283-2431282 Phaseolus vulgaris
Phvul.001G027300 2.0kb upstream 2.0kb upstream 4094 true Chr01: 2426189-2430282 Phaseolus vulgaris
Phvul.001G027300 2.0kb upstream 2.0kb upstream 2000 false Chr01: 2426189-2428188 Phaseolus vulgaris
Phvul.001G027300 2.0kb downstream 2.0kb downstream 4094 true Chr01: 2428189-2432282 Phaseolus vulgaris
Phvul.001G027300 2.0kb downstream 2.0kb downstream 2000 false Chr01: 2430283-2432282 Phaseolus vulgaris
Phvul.001G027300 5.0kb upstream 5.0kb upstream 7094 true Chr01: 2423189-2430282 Phaseolus vulgaris
Phvul.001G027300 5.0kb upstream 5.0kb upstream 5000 false Chr01: 2423189-2428188 Phaseolus vulgaris
Phvul.001G027300 5.0kb downstream 5.0kb downstream 7094 true Chr01: 2428189-2435282 Phaseolus vulgaris
Phvul.001G027300 5.0kb downstream 5.0kb downstream 5000 false Chr01: 2430283-2435282 Phaseolus vulgaris
Phvul.001G027300 10.0kb upstream 10.0kb upstream 12094 true Chr01: 2418189-2430282 Phaseolus vulgaris
Phvul.001G027300 10.0kb upstream 10.0kb upstream 10000 false Chr01: 2418189-2428188 Phaseolus vulgaris
Phvul.001G027300 10.0kb downstream 10.0kb downstream 12094 true Chr01: 2428189-2440282 Phaseolus vulgaris
Phvul.001G027300 10.0kb downstream 10.0kb downstream 10000 false Chr01: 2430283-2440282 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305892 5265 Fabidae View MSA
124062605 5270 Rosid View MSA
123738053 5271 Pentapetalae View MSA
122796694 5272 Eudicot View MSA
122047574 5273 Angiosperm View MSA
121350406 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.0734 0.0 57.0659    
cufflinks 17.3095 0.0 44.814    
cufflinks 12.9338 0.0 34.0383   Low
cufflinks 28.4499 0.0 74.0533    
cufflinks 49.8385 0.0 133.4 High High
cufflinks 12.8391 0.0 33.5865   Low
cufflinks 20.6636 0.0 53.4296    
cufflinks 9.7032 0.0 25.8127   Low
cufflinks 24.1166 0.0 62.5141    
cufflinks 27.7743 0.0 72.1075    
cufflinks 40.5952 0.0 107.64 High High

0 Strain