Gene : Phvul.001G028200 P. vulgaris v2.1
Defline:  (1 of 2) PTHR24206:SF35 - TRANSCRIPTION FACTOR-RELATED Genomic Order:  284
Name:  ? Phvul.001G028200 Secondary Identifier:  ? PAC:37168497
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G028200 0.5kb upstream 0.5kb upstream 2735 true Chr01: 2516388-2519122 Phaseolus vulgaris
Phvul.001G028200 0.5kb upstream 0.5kb upstream 500 false Chr01: 2516388-2516887 Phaseolus vulgaris
Phvul.001G028200 0.5kb downstream 0.5kb downstream 2735 true Chr01: 2516888-2519622 Phaseolus vulgaris
Phvul.001G028200 0.5kb downstream 0.5kb downstream 500 false Chr01: 2519123-2519622 Phaseolus vulgaris
Phvul.001G028200 1.0kb upstream 1.0kb upstream 3235 true Chr01: 2515888-2519122 Phaseolus vulgaris
Phvul.001G028200 1.0kb upstream 1.0kb upstream 1000 false Chr01: 2515888-2516887 Phaseolus vulgaris
Phvul.001G028200 1.0kb downstream 1.0kb downstream 3235 true Chr01: 2516888-2520122 Phaseolus vulgaris
Phvul.001G028200 1.0kb downstream 1.0kb downstream 1000 false Chr01: 2519123-2520122 Phaseolus vulgaris
Phvul.001G028200 2.0kb upstream 2.0kb upstream 4235 true Chr01: 2514888-2519122 Phaseolus vulgaris
Phvul.001G028200 2.0kb upstream 2.0kb upstream 2000 false Chr01: 2514888-2516887 Phaseolus vulgaris
Phvul.001G028200 2.0kb downstream 2.0kb downstream 4235 true Chr01: 2516888-2521122 Phaseolus vulgaris
Phvul.001G028200 2.0kb downstream 2.0kb downstream 2000 false Chr01: 2519123-2521122 Phaseolus vulgaris
Phvul.001G028200 5.0kb upstream 5.0kb upstream 7235 true Chr01: 2511888-2519122 Phaseolus vulgaris
Phvul.001G028200 5.0kb upstream 5.0kb upstream 5000 false Chr01: 2511888-2516887 Phaseolus vulgaris
Phvul.001G028200 5.0kb downstream 5.0kb downstream 7235 true Chr01: 2516888-2524122 Phaseolus vulgaris
Phvul.001G028200 5.0kb downstream 5.0kb downstream 5000 false Chr01: 2519123-2524122 Phaseolus vulgaris
Phvul.001G028200 10.0kb upstream 10.0kb upstream 12235 true Chr01: 2506888-2519122 Phaseolus vulgaris
Phvul.001G028200 10.0kb upstream 10.0kb upstream 10000 false Chr01: 2506888-2516887 Phaseolus vulgaris
Phvul.001G028200 10.0kb downstream 10.0kb downstream 12235 true Chr01: 2516888-2529122 Phaseolus vulgaris
Phvul.001G028200 10.0kb downstream 10.0kb downstream 10000 false Chr01: 2519123-2529122 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309325 5265 Fabidae View MSA
124066867 5270 Rosid View MSA
123744734 5271 Pentapetalae View MSA
122789493 5272 Eudicot View MSA
122049992 5273 Angiosperm View MSA
121348284 5274 Embryophyte View MSA
123426269 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.41361 0.0 20.3352   Low
cufflinks 14.9313 0.0 47.4169    
cufflinks 7.06966 0.0 25.146   Low
cufflinks 42.3625 0.0 137.559 High High
cufflinks 23.7654 0.0 69.2777    
cufflinks 19.4275 0.0 57.6953    
cufflinks 21.1572 0.0 62.1229    
cufflinks 10.7055 0.0 34.9231    
cufflinks 22.0088 0.0 72.337    
cufflinks 10.8945 0.0 36.0279    
cufflinks 48.1714 0.0 159.808 High High

0 Strain