Gene : Phvul.001G030200 P. vulgaris v2.1
Defline:  (1 of 1) K13211 - GC-rich sequence DNA-binding factor (GCFC) Genomic Order:  304
Name:  ? Phvul.001G030200 Secondary Identifier:  ? PAC:37170837
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G030200 0.5kb upstream 0.5kb upstream 7190 true Chr01: 2671497-2678686 Phaseolus vulgaris
Phvul.001G030200 0.5kb upstream 0.5kb upstream 500 false Chr01: 2678187-2678686 Phaseolus vulgaris
Phvul.001G030200 0.5kb downstream 0.5kb downstream 7190 true Chr01: 2670997-2678186 Phaseolus vulgaris
Phvul.001G030200 0.5kb downstream 0.5kb downstream 500 false Chr01: 2670997-2671496 Phaseolus vulgaris
Phvul.001G030200 1.0kb upstream 1.0kb upstream 7690 true Chr01: 2671497-2679186 Phaseolus vulgaris
Phvul.001G030200 1.0kb upstream 1.0kb upstream 1000 false Chr01: 2678187-2679186 Phaseolus vulgaris
Phvul.001G030200 1.0kb downstream 1.0kb downstream 7690 true Chr01: 2670497-2678186 Phaseolus vulgaris
Phvul.001G030200 1.0kb downstream 1.0kb downstream 1000 false Chr01: 2670497-2671496 Phaseolus vulgaris
Phvul.001G030200 2.0kb upstream 2.0kb upstream 8690 true Chr01: 2671497-2680186 Phaseolus vulgaris
Phvul.001G030200 2.0kb upstream 2.0kb upstream 2000 false Chr01: 2678187-2680186 Phaseolus vulgaris
Phvul.001G030200 2.0kb downstream 2.0kb downstream 8690 true Chr01: 2669497-2678186 Phaseolus vulgaris
Phvul.001G030200 2.0kb downstream 2.0kb downstream 2000 false Chr01: 2669497-2671496 Phaseolus vulgaris
Phvul.001G030200 5.0kb upstream 5.0kb upstream 11690 true Chr01: 2671497-2683186 Phaseolus vulgaris
Phvul.001G030200 5.0kb upstream 5.0kb upstream 5000 false Chr01: 2678187-2683186 Phaseolus vulgaris
Phvul.001G030200 5.0kb downstream 5.0kb downstream 11690 true Chr01: 2666497-2678186 Phaseolus vulgaris
Phvul.001G030200 5.0kb downstream 5.0kb downstream 5000 false Chr01: 2666497-2671496 Phaseolus vulgaris
Phvul.001G030200 10.0kb upstream 10.0kb upstream 16690 true Chr01: 2671497-2688186 Phaseolus vulgaris
Phvul.001G030200 10.0kb upstream 10.0kb upstream 10000 false Chr01: 2678187-2688186 Phaseolus vulgaris
Phvul.001G030200 10.0kb downstream 10.0kb downstream 16690 true Chr01: 2661497-2678186 Phaseolus vulgaris
Phvul.001G030200 10.0kb downstream 10.0kb downstream 10000 false Chr01: 2661497-2671496 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301094 5265 Fabidae View MSA
124050258 5270 Rosid View MSA
123739930 5271 Pentapetalae View MSA
122786850 5272 Eudicot View MSA
122041525 5273 Angiosperm View MSA
121344112 5274 Embryophyte View MSA
123425379 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.94523 0.0 20.693    
cufflinks 9.28735 0.0 24.0976    
cufflinks 8.89351 0.0 23.0966    
cufflinks 5.85551 0.0 15.5887   Low
cufflinks 10.5075 0.0 27.1987    
cufflinks 9.54348 0.0 24.7428    
cufflinks 9.67515 0.0 25.0565    
cufflinks 8.85791 0.0 22.9958    
cufflinks 10.695 0.0 27.6644    
cufflinks 15.6874 0.0 40.6416   High
cufflinks 10.6552 0.0 27.5705    

0 Strain