Gene : Phvul.001G015900 P. vulgaris v2.1
Defline:  (1 of 1) PTHR12320:SF1 - PROTEIN PHOSPHATASE PTC7 HOMOLOG Genomic Order:  159
Name:  ? Phvul.001G015900 Secondary Identifier:  ? PAC:37169057
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G015900 0.5kb upstream 0.5kb upstream 3924 true Chr01: 1221651-1225574 Phaseolus vulgaris
Phvul.001G015900 0.5kb upstream 0.5kb upstream 500 false Chr01: 1225075-1225574 Phaseolus vulgaris
Phvul.001G015900 0.5kb downstream 0.5kb downstream 3924 true Chr01: 1221151-1225074 Phaseolus vulgaris
Phvul.001G015900 0.5kb downstream 0.5kb downstream 500 false Chr01: 1221151-1221650 Phaseolus vulgaris
Phvul.001G015900 1.0kb upstream 1.0kb upstream 4424 true Chr01: 1221651-1226074 Phaseolus vulgaris
Phvul.001G015900 1.0kb upstream 1.0kb upstream 1000 false Chr01: 1225075-1226074 Phaseolus vulgaris
Phvul.001G015900 1.0kb downstream 1.0kb downstream 4424 true Chr01: 1220651-1225074 Phaseolus vulgaris
Phvul.001G015900 1.0kb downstream 1.0kb downstream 1000 false Chr01: 1220651-1221650 Phaseolus vulgaris
Phvul.001G015900 2.0kb upstream 2.0kb upstream 5424 true Chr01: 1221651-1227074 Phaseolus vulgaris
Phvul.001G015900 2.0kb upstream 2.0kb upstream 2000 false Chr01: 1225075-1227074 Phaseolus vulgaris
Phvul.001G015900 2.0kb downstream 2.0kb downstream 5424 true Chr01: 1219651-1225074 Phaseolus vulgaris
Phvul.001G015900 2.0kb downstream 2.0kb downstream 2000 false Chr01: 1219651-1221650 Phaseolus vulgaris
Phvul.001G015900 5.0kb upstream 5.0kb upstream 8424 true Chr01: 1221651-1230074 Phaseolus vulgaris
Phvul.001G015900 5.0kb upstream 5.0kb upstream 5000 false Chr01: 1225075-1230074 Phaseolus vulgaris
Phvul.001G015900 5.0kb downstream 5.0kb downstream 8424 true Chr01: 1216651-1225074 Phaseolus vulgaris
Phvul.001G015900 5.0kb downstream 5.0kb downstream 5000 false Chr01: 1216651-1221650 Phaseolus vulgaris
Phvul.001G015900 10.0kb upstream 10.0kb upstream 13424 true Chr01: 1221651-1235074 Phaseolus vulgaris
Phvul.001G015900 10.0kb upstream 10.0kb upstream 10000 false Chr01: 1225075-1235074 Phaseolus vulgaris
Phvul.001G015900 10.0kb downstream 10.0kb downstream 13424 true Chr01: 1211651-1225074 Phaseolus vulgaris
Phvul.001G015900 10.0kb downstream 10.0kb downstream 10000 false Chr01: 1211651-1221650 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305578 5265 Fabidae View MSA
124069007 5270 Rosid View MSA
123743389 5271 Pentapetalae View MSA
122796886 5272 Eudicot View MSA
122043108 5273 Angiosperm View MSA
121351334 5274 Embryophyte View MSA
123428574 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.2044 0.0 44.5293   High
cufflinks 15.6924 0.0 40.7064   High
cufflinks 11.0395 0.0 29.0216   Low
cufflinks 11.6899 0.0 30.8303    
cufflinks 14.1002 0.0 36.734    
cufflinks 12.2846 0.0 32.1532    
cufflinks 12.1618 0.0 31.8705    
cufflinks 10.6725 0.0 28.1058   Low
cufflinks 11.4385 0.0 30.1433    
cufflinks 16.1028 0.0 41.7408   High
cufflinks 12.8731 0.0 33.6659    

0 Strain