Gene : Phvul.001G019600 P. vulgaris v2.1
Defline:  (1 of 4) PTHR24012:SF403 - POLYADENYLATE-BINDING PROTEIN RBP47A Genomic Order:  197
Name:  ? Phvul.001G019600 Secondary Identifier:  ? PAC:37168432
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G019600 0.5kb upstream 0.5kb upstream 4977 true Chr01: 1570070-1575046 Phaseolus vulgaris
Phvul.001G019600 0.5kb upstream 0.5kb upstream 500 false Chr01: 1574547-1575046 Phaseolus vulgaris
Phvul.001G019600 0.5kb downstream 0.5kb downstream 4977 true Chr01: 1569570-1574546 Phaseolus vulgaris
Phvul.001G019600 0.5kb downstream 0.5kb downstream 500 false Chr01: 1569570-1570069 Phaseolus vulgaris
Phvul.001G019600 1.0kb upstream 1.0kb upstream 5477 true Chr01: 1570070-1575546 Phaseolus vulgaris
Phvul.001G019600 1.0kb upstream 1.0kb upstream 1000 false Chr01: 1574547-1575546 Phaseolus vulgaris
Phvul.001G019600 1.0kb downstream 1.0kb downstream 5477 true Chr01: 1569070-1574546 Phaseolus vulgaris
Phvul.001G019600 1.0kb downstream 1.0kb downstream 1000 false Chr01: 1569070-1570069 Phaseolus vulgaris
Phvul.001G019600 2.0kb upstream 2.0kb upstream 6477 true Chr01: 1570070-1576546 Phaseolus vulgaris
Phvul.001G019600 2.0kb upstream 2.0kb upstream 2000 false Chr01: 1574547-1576546 Phaseolus vulgaris
Phvul.001G019600 2.0kb downstream 2.0kb downstream 6477 true Chr01: 1568070-1574546 Phaseolus vulgaris
Phvul.001G019600 2.0kb downstream 2.0kb downstream 2000 false Chr01: 1568070-1570069 Phaseolus vulgaris
Phvul.001G019600 5.0kb upstream 5.0kb upstream 9477 true Chr01: 1570070-1579546 Phaseolus vulgaris
Phvul.001G019600 5.0kb upstream 5.0kb upstream 5000 false Chr01: 1574547-1579546 Phaseolus vulgaris
Phvul.001G019600 5.0kb downstream 5.0kb downstream 9477 true Chr01: 1565070-1574546 Phaseolus vulgaris
Phvul.001G019600 5.0kb downstream 5.0kb downstream 5000 false Chr01: 1565070-1570069 Phaseolus vulgaris
Phvul.001G019600 10.0kb upstream 10.0kb upstream 14477 true Chr01: 1570070-1584546 Phaseolus vulgaris
Phvul.001G019600 10.0kb upstream 10.0kb upstream 10000 false Chr01: 1574547-1584546 Phaseolus vulgaris
Phvul.001G019600 10.0kb downstream 10.0kb downstream 14477 true Chr01: 1560070-1574546 Phaseolus vulgaris
Phvul.001G019600 10.0kb downstream 10.0kb downstream 10000 false Chr01: 1560070-1570069 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122296827 5265 Fabidae View MSA
124064535 5270 Rosid View MSA
123751271 5271 Pentapetalae View MSA
122796677 5272 Eudicot View MSA
122051452 5273 Angiosperm View MSA
121351371 5274 Embryophyte View MSA
123424048 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 30.6286 0.0 79.876    
cufflinks 31.444 0.0 82.1084    
cufflinks 33.4363 0.0 87.5387    
cufflinks 21.1899 0.0 54.788   Low
cufflinks 29.646 0.0 77.1576    
cufflinks 25.3914 0.0 65.8269    
cufflinks 23.4 0.0 60.5962    
cufflinks 28.2161 0.0 73.4773 High  
cufflinks 27.2207 0.0 70.7218    
cufflinks 45.0731 0.0 120.426 High High
cufflinks 24.7923 0.0 64.2287    

0 Strain