Gene : Phvul.001G022200 P. vulgaris v2.1
Defline:  (1 of 1) PTHR33676:SF3 - COLD REGULATED PROTEIN 27 Genomic Order:  225
Name:  ? Phvul.001G022200 Secondary Identifier:  ? PAC:37170630
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G022200 0.5kb upstream 0.5kb upstream 4015 true Chr01: 1835694-1839708 Phaseolus vulgaris
Phvul.001G022200 0.5kb upstream 0.5kb upstream 500 false Chr01: 1839209-1839708 Phaseolus vulgaris
Phvul.001G022200 0.5kb downstream 0.5kb downstream 4015 true Chr01: 1835194-1839208 Phaseolus vulgaris
Phvul.001G022200 0.5kb downstream 0.5kb downstream 500 false Chr01: 1835194-1835693 Phaseolus vulgaris
Phvul.001G022200 1.0kb upstream 1.0kb upstream 4515 true Chr01: 1835694-1840208 Phaseolus vulgaris
Phvul.001G022200 1.0kb upstream 1.0kb upstream 1000 false Chr01: 1839209-1840208 Phaseolus vulgaris
Phvul.001G022200 1.0kb downstream 1.0kb downstream 4515 true Chr01: 1834694-1839208 Phaseolus vulgaris
Phvul.001G022200 1.0kb downstream 1.0kb downstream 1000 false Chr01: 1834694-1835693 Phaseolus vulgaris
Phvul.001G022200 2.0kb upstream 2.0kb upstream 5515 true Chr01: 1835694-1841208 Phaseolus vulgaris
Phvul.001G022200 2.0kb upstream 2.0kb upstream 2000 false Chr01: 1839209-1841208 Phaseolus vulgaris
Phvul.001G022200 2.0kb downstream 2.0kb downstream 5515 true Chr01: 1833694-1839208 Phaseolus vulgaris
Phvul.001G022200 2.0kb downstream 2.0kb downstream 2000 false Chr01: 1833694-1835693 Phaseolus vulgaris
Phvul.001G022200 5.0kb upstream 5.0kb upstream 8515 true Chr01: 1835694-1844208 Phaseolus vulgaris
Phvul.001G022200 5.0kb upstream 5.0kb upstream 5000 false Chr01: 1839209-1844208 Phaseolus vulgaris
Phvul.001G022200 5.0kb downstream 5.0kb downstream 8515 true Chr01: 1830694-1839208 Phaseolus vulgaris
Phvul.001G022200 5.0kb downstream 5.0kb downstream 5000 false Chr01: 1830694-1835693 Phaseolus vulgaris
Phvul.001G022200 10.0kb upstream 10.0kb upstream 13515 true Chr01: 1835694-1849208 Phaseolus vulgaris
Phvul.001G022200 10.0kb upstream 10.0kb upstream 10000 false Chr01: 1839209-1849208 Phaseolus vulgaris
Phvul.001G022200 10.0kb downstream 10.0kb downstream 13515 true Chr01: 1825694-1839208 Phaseolus vulgaris
Phvul.001G022200 10.0kb downstream 10.0kb downstream 10000 false Chr01: 1825694-1835693 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301825 5265 Fabidae View MSA
124071591 5270 Rosid View MSA
123751833 5271 Pentapetalae View MSA
122791785 5272 Eudicot View MSA
122049905 5273 Angiosperm View MSA
121311643 5274 Embryophyte View MSA
123348914 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 34.2566 0.0 110.758 High High
cufflinks 4.55203 0.0 19.267    
cufflinks 3.44269 0.0 15.2118    
cufflinks 11.2006 0.0 37.9903    
cufflinks 1.8516 0.0 9.92234    
cufflinks 0.982943 0.0 6.01935   Low
cufflinks 2.06661 0.0 8.37339    
cufflinks 2.16422 0.0 10.9659    
cufflinks 0.978079 0.0 5.97636   Low
cufflinks 13.4817 0.0 43.993   High
cufflinks 3.56426 0.0 16.0694    

0 Strain