Gene : Phvul.001G005600 P. vulgaris v2.1
Defline:  (1 of 2) K13115 - coiled-coil domain-containing protein 130 (CCDC130) Genomic Order:  55
Name:  ? Phvul.001G005600 Secondary Identifier:  ? PAC:37170661
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G005600 0.5kb upstream 0.5kb upstream 3545 true Chr01: 374500-378044 Phaseolus vulgaris
Phvul.001G005600 0.5kb upstream 0.5kb upstream 500 false Chr01: 374500-374999 Phaseolus vulgaris
Phvul.001G005600 0.5kb downstream 0.5kb downstream 3545 true Chr01: 375000-378544 Phaseolus vulgaris
Phvul.001G005600 0.5kb downstream 0.5kb downstream 500 false Chr01: 378045-378544 Phaseolus vulgaris
Phvul.001G005600 1.0kb upstream 1.0kb upstream 4045 true Chr01: 374000-378044 Phaseolus vulgaris
Phvul.001G005600 1.0kb upstream 1.0kb upstream 1000 false Chr01: 374000-374999 Phaseolus vulgaris
Phvul.001G005600 1.0kb downstream 1.0kb downstream 4045 true Chr01: 375000-379044 Phaseolus vulgaris
Phvul.001G005600 1.0kb downstream 1.0kb downstream 1000 false Chr01: 378045-379044 Phaseolus vulgaris
Phvul.001G005600 2.0kb upstream 2.0kb upstream 5045 true Chr01: 373000-378044 Phaseolus vulgaris
Phvul.001G005600 2.0kb upstream 2.0kb upstream 2000 false Chr01: 373000-374999 Phaseolus vulgaris
Phvul.001G005600 2.0kb downstream 2.0kb downstream 5045 true Chr01: 375000-380044 Phaseolus vulgaris
Phvul.001G005600 2.0kb downstream 2.0kb downstream 2000 false Chr01: 378045-380044 Phaseolus vulgaris
Phvul.001G005600 5.0kb upstream 5.0kb upstream 8045 true Chr01: 370000-378044 Phaseolus vulgaris
Phvul.001G005600 5.0kb upstream 5.0kb upstream 5000 false Chr01: 370000-374999 Phaseolus vulgaris
Phvul.001G005600 5.0kb downstream 5.0kb downstream 8045 true Chr01: 375000-383044 Phaseolus vulgaris
Phvul.001G005600 5.0kb downstream 5.0kb downstream 5000 false Chr01: 378045-383044 Phaseolus vulgaris
Phvul.001G005600 10.0kb upstream 10.0kb upstream 13045 true Chr01: 365000-378044 Phaseolus vulgaris
Phvul.001G005600 10.0kb upstream 10.0kb upstream 10000 false Chr01: 365000-374999 Phaseolus vulgaris
Phvul.001G005600 10.0kb downstream 10.0kb downstream 13045 true Chr01: 375000-388044 Phaseolus vulgaris
Phvul.001G005600 10.0kb downstream 10.0kb downstream 10000 false Chr01: 378045-388044 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308878 5265 Fabidae View MSA
124066479 5270 Rosid View MSA
123741019 5271 Pentapetalae View MSA
122788586 5272 Eudicot View MSA
122043974 5273 Angiosperm View MSA
121347159 5274 Embryophyte View MSA
123428869 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.5343 0.0 74.03   High
cufflinks 12.1964 0.0 33.3721    
cufflinks 14.9478 0.0 40.1695    
cufflinks 8.41895 0.0 23.9445   Low
cufflinks 11.8353 0.0 32.7882    
cufflinks 7.92161 0.0 22.5161   Low
cufflinks 13.9381 0.0 37.5971    
cufflinks 9.53881 0.0 26.4832    
cufflinks 8.85483 0.0 24.878    
cufflinks 22.7204 0.0 59.5348   High
cufflinks 16.777 0.0 44.9464    

0 Strain