Gene : Phvul.001G007900 P. vulgaris v2.1
Defline:  (1 of 5) K12619 - 5'-3' exoribonuclease 2 (XRN2, RAT1) Genomic Order:  78
Name:  ? Phvul.001G007900 Secondary Identifier:  ? PAC:37170792
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G007900 0.5kb upstream 0.5kb upstream 14051 true Chr01: 523238-537288 Phaseolus vulgaris
Phvul.001G007900 0.5kb upstream 0.5kb upstream 500 false Chr01: 536789-537288 Phaseolus vulgaris
Phvul.001G007900 0.5kb downstream 0.5kb downstream 14051 true Chr01: 522738-536788 Phaseolus vulgaris
Phvul.001G007900 0.5kb downstream 0.5kb downstream 500 false Chr01: 522738-523237 Phaseolus vulgaris
Phvul.001G007900 1.0kb upstream 1.0kb upstream 14551 true Chr01: 523238-537788 Phaseolus vulgaris
Phvul.001G007900 1.0kb upstream 1.0kb upstream 1000 false Chr01: 536789-537788 Phaseolus vulgaris
Phvul.001G007900 1.0kb downstream 1.0kb downstream 14551 true Chr01: 522238-536788 Phaseolus vulgaris
Phvul.001G007900 1.0kb downstream 1.0kb downstream 1000 false Chr01: 522238-523237 Phaseolus vulgaris
Phvul.001G007900 2.0kb upstream 2.0kb upstream 15551 true Chr01: 523238-538788 Phaseolus vulgaris
Phvul.001G007900 2.0kb upstream 2.0kb upstream 2000 false Chr01: 536789-538788 Phaseolus vulgaris
Phvul.001G007900 2.0kb downstream 2.0kb downstream 15551 true Chr01: 521238-536788 Phaseolus vulgaris
Phvul.001G007900 2.0kb downstream 2.0kb downstream 2000 false Chr01: 521238-523237 Phaseolus vulgaris
Phvul.001G007900 5.0kb upstream 5.0kb upstream 18551 true Chr01: 523238-541788 Phaseolus vulgaris
Phvul.001G007900 5.0kb upstream 5.0kb upstream 5000 false Chr01: 536789-541788 Phaseolus vulgaris
Phvul.001G007900 5.0kb downstream 5.0kb downstream 18551 true Chr01: 518238-536788 Phaseolus vulgaris
Phvul.001G007900 5.0kb downstream 5.0kb downstream 5000 false Chr01: 518238-523237 Phaseolus vulgaris
Phvul.001G007900 10.0kb upstream 10.0kb upstream 23551 true Chr01: 523238-546788 Phaseolus vulgaris
Phvul.001G007900 10.0kb upstream 10.0kb upstream 10000 false Chr01: 536789-546788 Phaseolus vulgaris
Phvul.001G007900 10.0kb downstream 10.0kb downstream 23551 true Chr01: 513238-536788 Phaseolus vulgaris
Phvul.001G007900 10.0kb downstream 10.0kb downstream 10000 false Chr01: 513238-523237 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026403 5273 Angiosperm View MSA
122300332 5265 Fabidae View MSA
124066178 5270 Rosid View MSA
123742031 5271 Pentapetalae View MSA
122789000 5272 Eudicot View MSA
123429022 5275 Viridiplantae View MSA
121350547 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.73306 0.0 15.174   Low
cufflinks 9.29147 0.0 24.0801    
cufflinks 17.0158 0.0 44.2619   High
cufflinks 4.65238 0.0 12.5775   Low
cufflinks 10.2008 0.0 26.4209    
cufflinks 13.788 0.0 35.6802    
cufflinks 15.577 0.0 40.4205    
cufflinks 14.1706 0.0 36.7123    
cufflinks 12.3843 0.0 32.0131    
cufflinks 16.7286 0.0 43.456    
cufflinks 10.0305 0.0 25.979    

0 Strain