Gene : Phvul.001G009300 P. vulgaris v2.1
Defline:  (1 of 1) PTHR10742:SF284 - LYSINE-SPECIFIC HISTONE DEMETHYLASE 1A Genomic Order:  92
Name:  ? Phvul.001G009300 Secondary Identifier:  ? PAC:37168004
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-6441 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G009300 0.5kb upstream 0.5kb upstream 11495 true Chr01: 693956-705450 Phaseolus vulgaris
Phvul.001G009300 0.5kb upstream 0.5kb upstream 500 false Chr01: 693956-694455 Phaseolus vulgaris
Phvul.001G009300 0.5kb downstream 0.5kb downstream 11495 true Chr01: 694456-705950 Phaseolus vulgaris
Phvul.001G009300 0.5kb downstream 0.5kb downstream 500 false Chr01: 705451-705950 Phaseolus vulgaris
Phvul.001G009300 1.0kb upstream 1.0kb upstream 11995 true Chr01: 693456-705450 Phaseolus vulgaris
Phvul.001G009300 1.0kb upstream 1.0kb upstream 1000 false Chr01: 693456-694455 Phaseolus vulgaris
Phvul.001G009300 1.0kb downstream 1.0kb downstream 11995 true Chr01: 694456-706450 Phaseolus vulgaris
Phvul.001G009300 1.0kb downstream 1.0kb downstream 1000 false Chr01: 705451-706450 Phaseolus vulgaris
Phvul.001G009300 2.0kb upstream 2.0kb upstream 12995 true Chr01: 692456-705450 Phaseolus vulgaris
Phvul.001G009300 2.0kb upstream 2.0kb upstream 2000 false Chr01: 692456-694455 Phaseolus vulgaris
Phvul.001G009300 2.0kb downstream 2.0kb downstream 12995 true Chr01: 694456-707450 Phaseolus vulgaris
Phvul.001G009300 2.0kb downstream 2.0kb downstream 2000 false Chr01: 705451-707450 Phaseolus vulgaris
Phvul.001G009300 5.0kb upstream 5.0kb upstream 15995 true Chr01: 689456-705450 Phaseolus vulgaris
Phvul.001G009300 5.0kb upstream 5.0kb upstream 5000 false Chr01: 689456-694455 Phaseolus vulgaris
Phvul.001G009300 5.0kb downstream 5.0kb downstream 15995 true Chr01: 694456-710450 Phaseolus vulgaris
Phvul.001G009300 5.0kb downstream 5.0kb downstream 5000 false Chr01: 705451-710450 Phaseolus vulgaris
Phvul.001G009300 10.0kb upstream 10.0kb upstream 20995 true Chr01: 684456-705450 Phaseolus vulgaris
Phvul.001G009300 10.0kb upstream 10.0kb upstream 10000 false Chr01: 684456-694455 Phaseolus vulgaris
Phvul.001G009300 10.0kb downstream 10.0kb downstream 20995 true Chr01: 694456-715450 Phaseolus vulgaris
Phvul.001G009300 10.0kb downstream 10.0kb downstream 10000 false Chr01: 705451-715450 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312967 5265 Fabidae View MSA
124062670 5270 Rosid View MSA
123738203 5271 Pentapetalae View MSA
122790962 5272 Eudicot View MSA
122046463 5273 Angiosperm View MSA
121349079 5274 Embryophyte View MSA
123428250 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.24303 0.0 7.88022   Low
cufflinks 5.98035 0.0 17.2539    
cufflinks 13.8686 0.0 42.5111    
cufflinks 2.57298 0.0 7.82915   Low
cufflinks 8.3564 0.0 24.0108    
cufflinks 16.804 0.0 53.1621   High
cufflinks 11.7028 0.0 34.4521    
cufflinks 15.5593 0.0 48.7486    
cufflinks 12.459 0.0 37.1144    
cufflinks 12.586 0.0 37.2641    
cufflinks 5.85297 0.0 19.513    

0 Strain