Gene : Phvul.001G013000 P. vulgaris v2.1
Defline:  (1 of 1) K02725 - 20S proteasome subunit alpha 6 (PSMA1) Genomic Order:  129
Name:  ? Phvul.001G013000 Secondary Identifier:  ? PAC:37171092
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G013000 0.5kb upstream 0.5kb upstream 3164 true Chr01: 990296-993459 Phaseolus vulgaris
Phvul.001G013000 0.5kb upstream 0.5kb upstream 500 false Chr01: 990296-990795 Phaseolus vulgaris
Phvul.001G013000 0.5kb downstream 0.5kb downstream 3164 true Chr01: 990796-993959 Phaseolus vulgaris
Phvul.001G013000 0.5kb downstream 0.5kb downstream 500 false Chr01: 993460-993959 Phaseolus vulgaris
Phvul.001G013000 1.0kb upstream 1.0kb upstream 3664 true Chr01: 989796-993459 Phaseolus vulgaris
Phvul.001G013000 1.0kb upstream 1.0kb upstream 1000 false Chr01: 989796-990795 Phaseolus vulgaris
Phvul.001G013000 1.0kb downstream 1.0kb downstream 3664 true Chr01: 990796-994459 Phaseolus vulgaris
Phvul.001G013000 1.0kb downstream 1.0kb downstream 1000 false Chr01: 993460-994459 Phaseolus vulgaris
Phvul.001G013000 2.0kb upstream 2.0kb upstream 4664 true Chr01: 988796-993459 Phaseolus vulgaris
Phvul.001G013000 2.0kb upstream 2.0kb upstream 2000 false Chr01: 988796-990795 Phaseolus vulgaris
Phvul.001G013000 2.0kb downstream 2.0kb downstream 4664 true Chr01: 990796-995459 Phaseolus vulgaris
Phvul.001G013000 2.0kb downstream 2.0kb downstream 2000 false Chr01: 993460-995459 Phaseolus vulgaris
Phvul.001G013000 5.0kb upstream 5.0kb upstream 7664 true Chr01: 985796-993459 Phaseolus vulgaris
Phvul.001G013000 5.0kb upstream 5.0kb upstream 5000 false Chr01: 985796-990795 Phaseolus vulgaris
Phvul.001G013000 5.0kb downstream 5.0kb downstream 7664 true Chr01: 990796-998459 Phaseolus vulgaris
Phvul.001G013000 5.0kb downstream 5.0kb downstream 5000 false Chr01: 993460-998459 Phaseolus vulgaris
Phvul.001G013000 10.0kb upstream 10.0kb upstream 12664 true Chr01: 980796-993459 Phaseolus vulgaris
Phvul.001G013000 10.0kb upstream 10.0kb upstream 10000 false Chr01: 980796-990795 Phaseolus vulgaris
Phvul.001G013000 10.0kb downstream 10.0kb downstream 12664 true Chr01: 990796-1003459 Phaseolus vulgaris
Phvul.001G013000 10.0kb downstream 10.0kb downstream 10000 false Chr01: 993460-1003459 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299393 5265 Fabidae View MSA
124065992 5270 Rosid View MSA
123739295 5271 Pentapetalae View MSA
122791097 5272 Eudicot View MSA
122046892 5273 Angiosperm View MSA
121347001 5274 Embryophyte View MSA
123424863 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 77.5419 0.0 205.961 High  
cufflinks 72.1697 0.0 190.792 High  
cufflinks 47.9972 0.0 124.41 High Low
cufflinks 112.158 0.0 308.673 High High
cufflinks 70.6095 0.0 186.818 High  
cufflinks 51.748 0.0 134.49 High  
cufflinks 59.4293 0.0 155.69 High  
cufflinks 50.9731 0.0 132.433 High  
cufflinks 84.1154 0.0 225.742 High  
cufflinks 43.6982 0.0 113.175 High Low
cufflinks 86.5802 0.0 232.779 High  

0 Strain