Gene : Phvul.001G013500 P. vulgaris v2.1
Defline:  (1 of 1) PTHR16517:SF41 - TUBBY-LIKE F-BOX PROTEIN 6 Genomic Order:  134
Name:  ? Phvul.001G013500 Secondary Identifier:  ? PAC:37168630
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G013500 0.5kb upstream 0.5kb upstream 4415 true Chr01: 1030637-1035051 Phaseolus vulgaris
Phvul.001G013500 0.5kb upstream 0.5kb upstream 500 false Chr01: 1030637-1031136 Phaseolus vulgaris
Phvul.001G013500 0.5kb downstream 0.5kb downstream 4415 true Chr01: 1031137-1035551 Phaseolus vulgaris
Phvul.001G013500 0.5kb downstream 0.5kb downstream 500 false Chr01: 1035052-1035551 Phaseolus vulgaris
Phvul.001G013500 1.0kb upstream 1.0kb upstream 4915 true Chr01: 1030137-1035051 Phaseolus vulgaris
Phvul.001G013500 1.0kb upstream 1.0kb upstream 1000 false Chr01: 1030137-1031136 Phaseolus vulgaris
Phvul.001G013500 1.0kb downstream 1.0kb downstream 4915 true Chr01: 1031137-1036051 Phaseolus vulgaris
Phvul.001G013500 1.0kb downstream 1.0kb downstream 1000 false Chr01: 1035052-1036051 Phaseolus vulgaris
Phvul.001G013500 2.0kb upstream 2.0kb upstream 5915 true Chr01: 1029137-1035051 Phaseolus vulgaris
Phvul.001G013500 2.0kb upstream 2.0kb upstream 2000 false Chr01: 1029137-1031136 Phaseolus vulgaris
Phvul.001G013500 2.0kb downstream 2.0kb downstream 5915 true Chr01: 1031137-1037051 Phaseolus vulgaris
Phvul.001G013500 2.0kb downstream 2.0kb downstream 2000 false Chr01: 1035052-1037051 Phaseolus vulgaris
Phvul.001G013500 5.0kb upstream 5.0kb upstream 8915 true Chr01: 1026137-1035051 Phaseolus vulgaris
Phvul.001G013500 5.0kb upstream 5.0kb upstream 5000 false Chr01: 1026137-1031136 Phaseolus vulgaris
Phvul.001G013500 5.0kb downstream 5.0kb downstream 8915 true Chr01: 1031137-1040051 Phaseolus vulgaris
Phvul.001G013500 5.0kb downstream 5.0kb downstream 5000 false Chr01: 1035052-1040051 Phaseolus vulgaris
Phvul.001G013500 10.0kb upstream 10.0kb upstream 13915 true Chr01: 1021137-1035051 Phaseolus vulgaris
Phvul.001G013500 10.0kb upstream 10.0kb upstream 10000 false Chr01: 1021137-1031136 Phaseolus vulgaris
Phvul.001G013500 10.0kb downstream 10.0kb downstream 13915 true Chr01: 1031137-1045051 Phaseolus vulgaris
Phvul.001G013500 10.0kb downstream 10.0kb downstream 10000 false Chr01: 1035052-1045051 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304674 5265 Fabidae View MSA
124063202 5270 Rosid View MSA
123747341 5271 Pentapetalae View MSA
122790799 5272 Eudicot View MSA
122049170 5273 Angiosperm View MSA
123429062 5275 Viridiplantae View MSA
121348967 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.16848 0.0 9.28    
cufflinks 7.08913 0.0 22.4291    
cufflinks 1.65752 0.0 5.65448    
cufflinks 1.06633 0.0 5.48911   Low
cufflinks 11.5474 0.0 38.8833   High
cufflinks 2.47606 0.0 10.2042    
cufflinks 2.51508 0.0 10.0992    
cufflinks 0.621397 0.0 2.734   Low
cufflinks 4.30417 0.0 15.0121    
cufflinks 2.51338 0.0 10.4142    
cufflinks 10.3881 0.0 35.6048   High

0 Strain