Gene : Phvul.001G001200 P. vulgaris v2.1
Defline:  (1 of 197) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  9
Name:  ? Phvul.001G001200 Secondary Identifier:  ? PAC:37170463
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G001200 0.5kb upstream 0.5kb upstream 8131 true Chr01: 61508-69638 Phaseolus vulgaris
Phvul.001G001200 0.5kb upstream 0.5kb upstream 500 false Chr01: 61508-62007 Phaseolus vulgaris
Phvul.001G001200 0.5kb downstream 0.5kb downstream 8131 true Chr01: 62008-70138 Phaseolus vulgaris
Phvul.001G001200 0.5kb downstream 0.5kb downstream 500 false Chr01: 69639-70138 Phaseolus vulgaris
Phvul.001G001200 1.0kb upstream 1.0kb upstream 8631 true Chr01: 61008-69638 Phaseolus vulgaris
Phvul.001G001200 1.0kb upstream 1.0kb upstream 1000 false Chr01: 61008-62007 Phaseolus vulgaris
Phvul.001G001200 1.0kb downstream 1.0kb downstream 8631 true Chr01: 62008-70638 Phaseolus vulgaris
Phvul.001G001200 1.0kb downstream 1.0kb downstream 1000 false Chr01: 69639-70638 Phaseolus vulgaris
Phvul.001G001200 2.0kb upstream 2.0kb upstream 9631 true Chr01: 60008-69638 Phaseolus vulgaris
Phvul.001G001200 2.0kb upstream 2.0kb upstream 2000 false Chr01: 60008-62007 Phaseolus vulgaris
Phvul.001G001200 2.0kb downstream 2.0kb downstream 9631 true Chr01: 62008-71638 Phaseolus vulgaris
Phvul.001G001200 2.0kb downstream 2.0kb downstream 2000 false Chr01: 69639-71638 Phaseolus vulgaris
Phvul.001G001200 5.0kb upstream 5.0kb upstream 12631 true Chr01: 57008-69638 Phaseolus vulgaris
Phvul.001G001200 5.0kb upstream 5.0kb upstream 5000 false Chr01: 57008-62007 Phaseolus vulgaris
Phvul.001G001200 5.0kb downstream 5.0kb downstream 12631 true Chr01: 62008-74638 Phaseolus vulgaris
Phvul.001G001200 5.0kb downstream 5.0kb downstream 5000 false Chr01: 69639-74638 Phaseolus vulgaris
Phvul.001G001200 10.0kb upstream 10.0kb upstream 17631 true Chr01: 52008-69638 Phaseolus vulgaris
Phvul.001G001200 10.0kb upstream 10.0kb upstream 10000 false Chr01: 52008-62007 Phaseolus vulgaris
Phvul.001G001200 10.0kb downstream 10.0kb downstream 17631 true Chr01: 62008-79638 Phaseolus vulgaris
Phvul.001G001200 10.0kb downstream 10.0kb downstream 10000 false Chr01: 69639-79638 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304133 5265 Fabidae View MSA
124062908 5270 Rosid View MSA
123739721 5271 Pentapetalae View MSA
122790096 5272 Eudicot View MSA
122047708 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121346208 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.56244 0.0 8.91423   Low
cufflinks 3.14796 0.0 11.0402    
cufflinks 3.94725 0.0 15.1223    
cufflinks 2.11148 0.0 12.6053   Low
cufflinks 2.35593 0.0 9.25612    
cufflinks 4.52441 0.0 20.2152    
cufflinks 4.68482 0.0 18.992   High
cufflinks 4.69218 0.0 20.8091   High
cufflinks 4.0174 0.0 15.6238    
cufflinks 3.37971 0.0 13.5768    
cufflinks 2.63236 0.0 9.90528    

0 Strain