Gene : Phvul.001G001000 P. vulgaris v2.1
Defline:  (1 of 2) K03781 - catalase (katE, CAT, catB, srpA) Genomic Order:  7
Name:  ? Phvul.001G001000 Secondary Identifier:  ? PAC:37169512
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris DETOX1-PWY Phaseolus vulgaris pathologic  
Pvulgaris DETOX1-PWY-1 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G001000 0.5kb upstream 0.5kb upstream 3288 true Chr01: 48548-51835 Phaseolus vulgaris
Phvul.001G001000 0.5kb upstream 0.5kb upstream 500 false Chr01: 51336-51835 Phaseolus vulgaris
Phvul.001G001000 0.5kb downstream 0.5kb downstream 3288 true Chr01: 48048-51335 Phaseolus vulgaris
Phvul.001G001000 0.5kb downstream 0.5kb downstream 500 false Chr01: 48048-48547 Phaseolus vulgaris
Phvul.001G001000 1.0kb upstream 1.0kb upstream 3788 true Chr01: 48548-52335 Phaseolus vulgaris
Phvul.001G001000 1.0kb upstream 1.0kb upstream 1000 false Chr01: 51336-52335 Phaseolus vulgaris
Phvul.001G001000 1.0kb downstream 1.0kb downstream 3788 true Chr01: 47548-51335 Phaseolus vulgaris
Phvul.001G001000 1.0kb downstream 1.0kb downstream 1000 false Chr01: 47548-48547 Phaseolus vulgaris
Phvul.001G001000 2.0kb upstream 2.0kb upstream 4788 true Chr01: 48548-53335 Phaseolus vulgaris
Phvul.001G001000 2.0kb upstream 2.0kb upstream 2000 false Chr01: 51336-53335 Phaseolus vulgaris
Phvul.001G001000 2.0kb downstream 2.0kb downstream 4788 true Chr01: 46548-51335 Phaseolus vulgaris
Phvul.001G001000 2.0kb downstream 2.0kb downstream 2000 false Chr01: 46548-48547 Phaseolus vulgaris
Phvul.001G001000 5.0kb upstream 5.0kb upstream 7788 true Chr01: 48548-56335 Phaseolus vulgaris
Phvul.001G001000 5.0kb upstream 5.0kb upstream 5000 false Chr01: 51336-56335 Phaseolus vulgaris
Phvul.001G001000 5.0kb downstream 5.0kb downstream 7788 true Chr01: 43548-51335 Phaseolus vulgaris
Phvul.001G001000 5.0kb downstream 5.0kb downstream 5000 false Chr01: 43548-48547 Phaseolus vulgaris
Phvul.001G001000 10.0kb upstream 10.0kb upstream 12788 true Chr01: 48548-61335 Phaseolus vulgaris
Phvul.001G001000 10.0kb upstream 10.0kb upstream 10000 false Chr01: 51336-61335 Phaseolus vulgaris
Phvul.001G001000 10.0kb downstream 10.0kb downstream 12788 true Chr01: 38548-51335 Phaseolus vulgaris
Phvul.001G001000 10.0kb downstream 10.0kb downstream 10000 false Chr01: 38548-48547 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040958 5273 Angiosperm View MSA
122309961 5265 Fabidae View MSA
124061092 5270 Rosid View MSA
123744547 5271 Pentapetalae View MSA
122789351 5272 Eudicot View MSA
121344781 5274 Embryophyte View MSA
123424047 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 85.5 0.0 239.369 High  
cufflinks 50.9709 0.0 135.785 High  
cufflinks 5.97397 0.0 16.6118   Low
cufflinks 46.9174 0.0 124.374 High  
cufflinks 78.1944 0.0 217.415 High  
cufflinks 8.07863 0.0 21.9044   Low
cufflinks 36.3172 0.0 95.0296 High  
cufflinks 32.8694 0.0 85.557 High  
cufflinks 101.672 0.0 291.287 High High
cufflinks 95.9161 0.0 271.439 High  
cufflinks 27.8141 0.0 72.0233    

0 Strain