Gene : Phvul.001G003500 P. vulgaris v2.1
Defline:  (1 of 2) PTHR13516//PTHR13516:SF9 - RIBONUCLEASE P SUBUNIT P25 // SUBFAMILY NOT NAMED Genomic Order:  32
Name:  ? Phvul.001G003500 Secondary Identifier:  ? PAC:37170156
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G003500 0.5kb upstream 0.5kb upstream 4834 true Chr01: 200501-205334 Phaseolus vulgaris
Phvul.001G003500 0.5kb upstream 0.5kb upstream 500 false Chr01: 200501-201000 Phaseolus vulgaris
Phvul.001G003500 0.5kb downstream 0.5kb downstream 4834 true Chr01: 201001-205834 Phaseolus vulgaris
Phvul.001G003500 0.5kb downstream 0.5kb downstream 500 false Chr01: 205335-205834 Phaseolus vulgaris
Phvul.001G003500 1.0kb upstream 1.0kb upstream 5334 true Chr01: 200001-205334 Phaseolus vulgaris
Phvul.001G003500 1.0kb upstream 1.0kb upstream 1000 false Chr01: 200001-201000 Phaseolus vulgaris
Phvul.001G003500 1.0kb downstream 1.0kb downstream 5334 true Chr01: 201001-206334 Phaseolus vulgaris
Phvul.001G003500 1.0kb downstream 1.0kb downstream 1000 false Chr01: 205335-206334 Phaseolus vulgaris
Phvul.001G003500 2.0kb upstream 2.0kb upstream 6334 true Chr01: 199001-205334 Phaseolus vulgaris
Phvul.001G003500 2.0kb upstream 2.0kb upstream 2000 false Chr01: 199001-201000 Phaseolus vulgaris
Phvul.001G003500 2.0kb downstream 2.0kb downstream 6334 true Chr01: 201001-207334 Phaseolus vulgaris
Phvul.001G003500 2.0kb downstream 2.0kb downstream 2000 false Chr01: 205335-207334 Phaseolus vulgaris
Phvul.001G003500 5.0kb upstream 5.0kb upstream 9334 true Chr01: 196001-205334 Phaseolus vulgaris
Phvul.001G003500 5.0kb upstream 5.0kb upstream 5000 false Chr01: 196001-201000 Phaseolus vulgaris
Phvul.001G003500 5.0kb downstream 5.0kb downstream 9334 true Chr01: 201001-210334 Phaseolus vulgaris
Phvul.001G003500 5.0kb downstream 5.0kb downstream 5000 false Chr01: 205335-210334 Phaseolus vulgaris
Phvul.001G003500 10.0kb upstream 10.0kb upstream 14334 true Chr01: 191001-205334 Phaseolus vulgaris
Phvul.001G003500 10.0kb upstream 10.0kb upstream 10000 false Chr01: 191001-201000 Phaseolus vulgaris
Phvul.001G003500 10.0kb downstream 10.0kb downstream 14334 true Chr01: 201001-215334 Phaseolus vulgaris
Phvul.001G003500 10.0kb downstream 10.0kb downstream 10000 false Chr01: 205335-215334 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303871 5265 Fabidae View MSA
124072183 5270 Rosid View MSA
123752020 5271 Pentapetalae View MSA
122793375 5272 Eudicot View MSA
122050157 5273 Angiosperm View MSA
121346602 5274 Embryophyte View MSA
123428727 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 85.6889 0.0 234.223 High Low
cufflinks 174.496 0.0 522.772 High High
cufflinks 122.518 0.0 348.573 High  
cufflinks 145.81 0.0 419.354 High  
cufflinks 178.365 0.0 530.972 High High
cufflinks 132.461 0.0 382.05 High  
cufflinks 90.3721 0.0 251.363 High  
cufflinks 86.1577 0.0 238.117 High Low
cufflinks 155.861 0.0 462.294 High  
cufflinks 74.4451 0.0 201.291 High Low
cufflinks 144.279 0.0 420.694 High  

0 Strain