Gene : Phvul.001G001900 P. vulgaris v2.1
Defline:  (1 of 1) PTHR10357:SF118 - ALPHA-AMYLASE 2-RELATED Genomic Order:  16
Name:  ? Phvul.001G001900 Secondary Identifier:  ? PAC:37168054
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G001900 0.5kb upstream 0.5kb upstream 4273 true Chr01: 133560-137832 Phaseolus vulgaris
Phvul.001G001900 0.5kb upstream 0.5kb upstream 500 false Chr01: 137333-137832 Phaseolus vulgaris
Phvul.001G001900 0.5kb downstream 0.5kb downstream 4273 true Chr01: 133060-137332 Phaseolus vulgaris
Phvul.001G001900 0.5kb downstream 0.5kb downstream 500 false Chr01: 133060-133559 Phaseolus vulgaris
Phvul.001G001900 1.0kb upstream 1.0kb upstream 4773 true Chr01: 133560-138332 Phaseolus vulgaris
Phvul.001G001900 1.0kb upstream 1.0kb upstream 1000 false Chr01: 137333-138332 Phaseolus vulgaris
Phvul.001G001900 1.0kb downstream 1.0kb downstream 4773 true Chr01: 132560-137332 Phaseolus vulgaris
Phvul.001G001900 1.0kb downstream 1.0kb downstream 1000 false Chr01: 132560-133559 Phaseolus vulgaris
Phvul.001G001900 2.0kb upstream 2.0kb upstream 5773 true Chr01: 133560-139332 Phaseolus vulgaris
Phvul.001G001900 2.0kb upstream 2.0kb upstream 2000 false Chr01: 137333-139332 Phaseolus vulgaris
Phvul.001G001900 2.0kb downstream 2.0kb downstream 5773 true Chr01: 131560-137332 Phaseolus vulgaris
Phvul.001G001900 2.0kb downstream 2.0kb downstream 2000 false Chr01: 131560-133559 Phaseolus vulgaris
Phvul.001G001900 5.0kb upstream 5.0kb upstream 8773 true Chr01: 133560-142332 Phaseolus vulgaris
Phvul.001G001900 5.0kb upstream 5.0kb upstream 5000 false Chr01: 137333-142332 Phaseolus vulgaris
Phvul.001G001900 5.0kb downstream 5.0kb downstream 8773 true Chr01: 128560-137332 Phaseolus vulgaris
Phvul.001G001900 5.0kb downstream 5.0kb downstream 5000 false Chr01: 128560-133559 Phaseolus vulgaris
Phvul.001G001900 10.0kb upstream 10.0kb upstream 13773 true Chr01: 133560-147332 Phaseolus vulgaris
Phvul.001G001900 10.0kb upstream 10.0kb upstream 10000 false Chr01: 137333-147332 Phaseolus vulgaris
Phvul.001G001900 10.0kb downstream 10.0kb downstream 13773 true Chr01: 123560-137332 Phaseolus vulgaris
Phvul.001G001900 10.0kb downstream 10.0kb downstream 10000 false Chr01: 123560-133559 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303124 5265 Fabidae View MSA
124067606 5270 Rosid View MSA
123751733 5271 Pentapetalae View MSA
122785800 5272 Eudicot View MSA
122050125 5273 Angiosperm View MSA
121348688 5274 Embryophyte View MSA
123427521 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 137.913 0.0 418.285 High High
cufflinks 14.1076 0.0 36.6791    
cufflinks 30.0186 0.0 78.1987    
cufflinks 14.0716 0.0 36.6921    
cufflinks 53.5622 0.0 143.882 High  
cufflinks 2.00457 0.0 6.19294   Low
cufflinks 15.6078 0.0 40.47    
cufflinks 5.13209 0.0 14.2849   Low
cufflinks 5.13899 0.0 14.387   Low
cufflinks 29.472 0.0 76.639    
cufflinks 70.1805 0.0 193.582 High High

0 Strain