Gene : Phvul.001G002300 P. vulgaris v2.1
Defline:  (1 of 2) PTHR13675:SF0 - LYR MOTIF-CONTAINING PROTEIN 2 Genomic Order:  20
Name:  ? Phvul.001G002300 Secondary Identifier:  ? PAC:37170695
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G002300 0.5kb upstream 0.5kb upstream 1977 true Chr01: 149485-151461 Phaseolus vulgaris
Phvul.001G002300 0.5kb upstream 0.5kb upstream 500 false Chr01: 149485-149984 Phaseolus vulgaris
Phvul.001G002300 0.5kb downstream 0.5kb downstream 1977 true Chr01: 149985-151961 Phaseolus vulgaris
Phvul.001G002300 0.5kb downstream 0.5kb downstream 500 false Chr01: 151462-151961 Phaseolus vulgaris
Phvul.001G002300 1.0kb upstream 1.0kb upstream 2477 true Chr01: 148985-151461 Phaseolus vulgaris
Phvul.001G002300 1.0kb upstream 1.0kb upstream 1000 false Chr01: 148985-149984 Phaseolus vulgaris
Phvul.001G002300 1.0kb downstream 1.0kb downstream 2477 true Chr01: 149985-152461 Phaseolus vulgaris
Phvul.001G002300 1.0kb downstream 1.0kb downstream 1000 false Chr01: 151462-152461 Phaseolus vulgaris
Phvul.001G002300 2.0kb upstream 2.0kb upstream 3477 true Chr01: 147985-151461 Phaseolus vulgaris
Phvul.001G002300 2.0kb upstream 2.0kb upstream 2000 false Chr01: 147985-149984 Phaseolus vulgaris
Phvul.001G002300 2.0kb downstream 2.0kb downstream 3477 true Chr01: 149985-153461 Phaseolus vulgaris
Phvul.001G002300 2.0kb downstream 2.0kb downstream 2000 false Chr01: 151462-153461 Phaseolus vulgaris
Phvul.001G002300 5.0kb upstream 5.0kb upstream 6477 true Chr01: 144985-151461 Phaseolus vulgaris
Phvul.001G002300 5.0kb upstream 5.0kb upstream 5000 false Chr01: 144985-149984 Phaseolus vulgaris
Phvul.001G002300 5.0kb downstream 5.0kb downstream 6477 true Chr01: 149985-156461 Phaseolus vulgaris
Phvul.001G002300 5.0kb downstream 5.0kb downstream 5000 false Chr01: 151462-156461 Phaseolus vulgaris
Phvul.001G002300 10.0kb upstream 10.0kb upstream 11477 true Chr01: 139985-151461 Phaseolus vulgaris
Phvul.001G002300 10.0kb upstream 10.0kb upstream 10000 false Chr01: 139985-149984 Phaseolus vulgaris
Phvul.001G002300 10.0kb downstream 10.0kb downstream 11477 true Chr01: 149985-161461 Phaseolus vulgaris
Phvul.001G002300 10.0kb downstream 10.0kb downstream 10000 false Chr01: 151462-161461 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028538 5273 Angiosperm View MSA
122312190 5265 Fabidae View MSA
124050217 5270 Rosid View MSA
123749914 5271 Pentapetalae View MSA
122789419 5272 Eudicot View MSA
121346183 5274 Embryophyte View MSA
123425474 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.83373 0.0 10.8935    
cufflinks 2.78475 0.0 15.1482   High
cufflinks 0.489378 0.0 2.00638 Low Low
cufflinks 2.23463 0.0 12.7408   High
cufflinks 0.506538 0.0 2.09005 Low Low
cufflinks 1.67646 0.0 10.1619    
cufflinks 0.837697 0.0 5.91917    
cufflinks 1.25381 0.0 8.28004    
cufflinks 0.815909 0.0 5.79118    
cufflinks 0.830308 0.0 3.28276    
cufflinks 0.967122 0.0 3.77604    

0 Strain