Gene : Phvul.001G109200 P. vulgaris v2.1
Defline:  (1 of 2) PTHR10438:SF245 - THIOREDOXIN-LIKE 1-1, CHLOROPLASTIC-RELATED Genomic Order:  1064
Name:  ? Phvul.001G109200 Secondary Identifier:  ? PAC:37170645
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G109200 0.5kb upstream 0.5kb upstream 3202 true Chr01: 28494865-28498066 Phaseolus vulgaris
Phvul.001G109200 0.5kb upstream 0.5kb upstream 500 false Chr01: 28494865-28495364 Phaseolus vulgaris
Phvul.001G109200 0.5kb downstream 0.5kb downstream 3202 true Chr01: 28495365-28498566 Phaseolus vulgaris
Phvul.001G109200 0.5kb downstream 0.5kb downstream 500 false Chr01: 28498067-28498566 Phaseolus vulgaris
Phvul.001G109200 1.0kb upstream 1.0kb upstream 3702 true Chr01: 28494365-28498066 Phaseolus vulgaris
Phvul.001G109200 1.0kb upstream 1.0kb upstream 1000 false Chr01: 28494365-28495364 Phaseolus vulgaris
Phvul.001G109200 1.0kb downstream 1.0kb downstream 3702 true Chr01: 28495365-28499066 Phaseolus vulgaris
Phvul.001G109200 1.0kb downstream 1.0kb downstream 1000 false Chr01: 28498067-28499066 Phaseolus vulgaris
Phvul.001G109200 2.0kb upstream 2.0kb upstream 4702 true Chr01: 28493365-28498066 Phaseolus vulgaris
Phvul.001G109200 2.0kb upstream 2.0kb upstream 2000 false Chr01: 28493365-28495364 Phaseolus vulgaris
Phvul.001G109200 2.0kb downstream 2.0kb downstream 4702 true Chr01: 28495365-28500066 Phaseolus vulgaris
Phvul.001G109200 2.0kb downstream 2.0kb downstream 2000 false Chr01: 28498067-28500066 Phaseolus vulgaris
Phvul.001G109200 5.0kb upstream 5.0kb upstream 7702 true Chr01: 28490365-28498066 Phaseolus vulgaris
Phvul.001G109200 5.0kb upstream 5.0kb upstream 5000 false Chr01: 28490365-28495364 Phaseolus vulgaris
Phvul.001G109200 5.0kb downstream 5.0kb downstream 7702 true Chr01: 28495365-28503066 Phaseolus vulgaris
Phvul.001G109200 5.0kb downstream 5.0kb downstream 5000 false Chr01: 28498067-28503066 Phaseolus vulgaris
Phvul.001G109200 10.0kb upstream 10.0kb upstream 12702 true Chr01: 28485365-28498066 Phaseolus vulgaris
Phvul.001G109200 10.0kb upstream 10.0kb upstream 10000 false Chr01: 28485365-28495364 Phaseolus vulgaris
Phvul.001G109200 10.0kb downstream 10.0kb downstream 12702 true Chr01: 28495365-28508066 Phaseolus vulgaris
Phvul.001G109200 10.0kb downstream 10.0kb downstream 10000 false Chr01: 28498067-28508066 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303235 5265 Fabidae View MSA
124067086 5270 Rosid View MSA
123745414 5271 Pentapetalae View MSA
122792337 5272 Eudicot View MSA
122048222 5273 Angiosperm View MSA
121347781 5274 Embryophyte View MSA
123427936 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 36.7213 0.0 94.9641 High High
cufflinks 21.4003 0.0 55.836    
cufflinks 15.901 0.0 42.1276    
cufflinks 25.4217 0.0 65.989    
cufflinks 29.8911 0.0 77.3479   High
cufflinks 6.66863 0.0 19.0607   Low
cufflinks 4.8274 0.0 14.2861   Low
cufflinks 6.05077 0.0 17.4103   Low
cufflinks 14.2566 0.0 38.1908    
cufflinks 18.4578 0.0 48.5512    
cufflinks 10.9033 0.0 29.8992    

0 Strain