Gene : Phvul.001G107000 P. vulgaris v2.1
Defline:  (1 of 1) K19054 - frataxin (FXN) Genomic Order:  1001
Name:  ? Phvul.001G107000 Secondary Identifier:  ? PAC:37169605
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G107000 0.5kb upstream 0.5kb upstream 19568 true Chr01: 22271026-22290593 Phaseolus vulgaris
Phvul.001G107000 0.5kb upstream 0.5kb upstream 500 false Chr01: 22271026-22271525 Phaseolus vulgaris
Phvul.001G107000 0.5kb downstream 0.5kb downstream 19568 true Chr01: 22271526-22291093 Phaseolus vulgaris
Phvul.001G107000 0.5kb downstream 0.5kb downstream 500 false Chr01: 22290594-22291093 Phaseolus vulgaris
Phvul.001G107000 1.0kb upstream 1.0kb upstream 20068 true Chr01: 22270526-22290593 Phaseolus vulgaris
Phvul.001G107000 1.0kb upstream 1.0kb upstream 1000 false Chr01: 22270526-22271525 Phaseolus vulgaris
Phvul.001G107000 1.0kb downstream 1.0kb downstream 20068 true Chr01: 22271526-22291593 Phaseolus vulgaris
Phvul.001G107000 1.0kb downstream 1.0kb downstream 1000 false Chr01: 22290594-22291593 Phaseolus vulgaris
Phvul.001G107000 2.0kb upstream 2.0kb upstream 21068 true Chr01: 22269526-22290593 Phaseolus vulgaris
Phvul.001G107000 2.0kb upstream 2.0kb upstream 2000 false Chr01: 22269526-22271525 Phaseolus vulgaris
Phvul.001G107000 2.0kb downstream 2.0kb downstream 21068 true Chr01: 22271526-22292593 Phaseolus vulgaris
Phvul.001G107000 2.0kb downstream 2.0kb downstream 2000 false Chr01: 22290594-22292593 Phaseolus vulgaris
Phvul.001G107000 5.0kb upstream 5.0kb upstream 24068 true Chr01: 22266526-22290593 Phaseolus vulgaris
Phvul.001G107000 5.0kb upstream 5.0kb upstream 5000 false Chr01: 22266526-22271525 Phaseolus vulgaris
Phvul.001G107000 5.0kb downstream 5.0kb downstream 24068 true Chr01: 22271526-22295593 Phaseolus vulgaris
Phvul.001G107000 5.0kb downstream 5.0kb downstream 5000 false Chr01: 22290594-22295593 Phaseolus vulgaris
Phvul.001G107000 10.0kb upstream 10.0kb upstream 29068 true Chr01: 22261526-22290593 Phaseolus vulgaris
Phvul.001G107000 10.0kb upstream 10.0kb upstream 10000 false Chr01: 22261526-22271525 Phaseolus vulgaris
Phvul.001G107000 10.0kb downstream 10.0kb downstream 29068 true Chr01: 22271526-22300593 Phaseolus vulgaris
Phvul.001G107000 10.0kb downstream 10.0kb downstream 10000 false Chr01: 22290594-22300593 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302575 5265 Fabidae View MSA
124065709 5270 Rosid View MSA
123738900 5271 Pentapetalae View MSA
122786568 5272 Eudicot View MSA
122048481 5273 Angiosperm View MSA
121346904 5274 Embryophyte View MSA
123425316 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.4647 0.0 54.6554   High
cufflinks 15.2923 0.0 54.4401   High
cufflinks 9.42118 0.0 36.7902   Low
cufflinks 17.7673 0.0 63.7605   High
cufflinks 10.564 0.0 40.8854    
cufflinks 8.80693 0.0 35.3769   Low
cufflinks 10.2687 0.0 40.0094    
cufflinks 14.0772 0.0 50.8969    
cufflinks 10.1482 0.0 39.828    
cufflinks 13.288 0.0 48.7482    
cufflinks 10.0744 0.0 39.5914    

0 Strain