Gene : Phvul.001G107500 P. vulgaris v2.1
Defline:  (1 of 1) PTHR10314:SF90 - S-SULFOCYSTEINE SYNTHASE, CHLOROPLASTIC-RELATED Genomic Order:  1006
Name:  ? Phvul.001G107500 Secondary Identifier:  ? PAC:37170191
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris CYSTSYN-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-6936 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G107500 0.5kb upstream 0.5kb upstream 5192 true Chr01: 22504818-22510009 Phaseolus vulgaris
Phvul.001G107500 0.5kb upstream 0.5kb upstream 500 false Chr01: 22504818-22505317 Phaseolus vulgaris
Phvul.001G107500 0.5kb downstream 0.5kb downstream 5192 true Chr01: 22505318-22510509 Phaseolus vulgaris
Phvul.001G107500 0.5kb downstream 0.5kb downstream 500 false Chr01: 22510010-22510509 Phaseolus vulgaris
Phvul.001G107500 1.0kb upstream 1.0kb upstream 5692 true Chr01: 22504318-22510009 Phaseolus vulgaris
Phvul.001G107500 1.0kb upstream 1.0kb upstream 1000 false Chr01: 22504318-22505317 Phaseolus vulgaris
Phvul.001G107500 1.0kb downstream 1.0kb downstream 5692 true Chr01: 22505318-22511009 Phaseolus vulgaris
Phvul.001G107500 1.0kb downstream 1.0kb downstream 1000 false Chr01: 22510010-22511009 Phaseolus vulgaris
Phvul.001G107500 2.0kb upstream 2.0kb upstream 6692 true Chr01: 22503318-22510009 Phaseolus vulgaris
Phvul.001G107500 2.0kb upstream 2.0kb upstream 2000 false Chr01: 22503318-22505317 Phaseolus vulgaris
Phvul.001G107500 2.0kb downstream 2.0kb downstream 6692 true Chr01: 22505318-22512009 Phaseolus vulgaris
Phvul.001G107500 2.0kb downstream 2.0kb downstream 2000 false Chr01: 22510010-22512009 Phaseolus vulgaris
Phvul.001G107500 5.0kb upstream 5.0kb upstream 9692 true Chr01: 22500318-22510009 Phaseolus vulgaris
Phvul.001G107500 5.0kb upstream 5.0kb upstream 5000 false Chr01: 22500318-22505317 Phaseolus vulgaris
Phvul.001G107500 5.0kb downstream 5.0kb downstream 9692 true Chr01: 22505318-22515009 Phaseolus vulgaris
Phvul.001G107500 5.0kb downstream 5.0kb downstream 5000 false Chr01: 22510010-22515009 Phaseolus vulgaris
Phvul.001G107500 10.0kb upstream 10.0kb upstream 14692 true Chr01: 22495318-22510009 Phaseolus vulgaris
Phvul.001G107500 10.0kb upstream 10.0kb upstream 10000 false Chr01: 22495318-22505317 Phaseolus vulgaris
Phvul.001G107500 10.0kb downstream 10.0kb downstream 14692 true Chr01: 22505318-22520009 Phaseolus vulgaris
Phvul.001G107500 10.0kb downstream 10.0kb downstream 10000 false Chr01: 22510010-22520009 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302417 5265 Fabidae View MSA
124067965 5270 Rosid View MSA
123741617 5271 Pentapetalae View MSA
122788921 5272 Eudicot View MSA
122042312 5273 Angiosperm View MSA
121350970 5274 Embryophyte View MSA
123424805 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.68016 0.0 10.8796    
cufflinks 7.24635 0.0 20.1469   High
cufflinks 3.7331 0.0 11.0673    
cufflinks 4.31608 0.0 12.6689    
cufflinks 3.02408 0.0 9.2845    
cufflinks 5.94955 0.0 16.823   High
cufflinks 1.42819 0.0 4.74497   Low
cufflinks 2.6376 0.0 8.1448    
cufflinks 1.22099 0.0 4.12554   Low
cufflinks 2.6174 0.0 8.12678    
cufflinks 2.07695 0.0 6.63544    

0 Strain