Gene : Phvul.001G112200 P. vulgaris v2.1
Defline:  (1 of 2) PTHR10438:SF245 - THIOREDOXIN-LIKE 1-1, CHLOROPLASTIC-RELATED Genomic Order:  1157
Name:  ? Phvul.001G112200 Secondary Identifier:  ? PAC:37168304
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G112200 0.5kb upstream 0.5kb upstream 2912 true Chr01: 32271469-32274380 Phaseolus vulgaris
Phvul.001G112200 0.5kb upstream 0.5kb upstream 500 false Chr01: 32271469-32271968 Phaseolus vulgaris
Phvul.001G112200 0.5kb downstream 0.5kb downstream 2912 true Chr01: 32271969-32274880 Phaseolus vulgaris
Phvul.001G112200 0.5kb downstream 0.5kb downstream 500 false Chr01: 32274381-32274880 Phaseolus vulgaris
Phvul.001G112200 1.0kb upstream 1.0kb upstream 3412 true Chr01: 32270969-32274380 Phaseolus vulgaris
Phvul.001G112200 1.0kb upstream 1.0kb upstream 1000 false Chr01: 32270969-32271968 Phaseolus vulgaris
Phvul.001G112200 1.0kb downstream 1.0kb downstream 3412 true Chr01: 32271969-32275380 Phaseolus vulgaris
Phvul.001G112200 1.0kb downstream 1.0kb downstream 1000 false Chr01: 32274381-32275380 Phaseolus vulgaris
Phvul.001G112200 2.0kb upstream 2.0kb upstream 4412 true Chr01: 32269969-32274380 Phaseolus vulgaris
Phvul.001G112200 2.0kb upstream 2.0kb upstream 2000 false Chr01: 32269969-32271968 Phaseolus vulgaris
Phvul.001G112200 2.0kb downstream 2.0kb downstream 4412 true Chr01: 32271969-32276380 Phaseolus vulgaris
Phvul.001G112200 2.0kb downstream 2.0kb downstream 2000 false Chr01: 32274381-32276380 Phaseolus vulgaris
Phvul.001G112200 5.0kb upstream 5.0kb upstream 7412 true Chr01: 32266969-32274380 Phaseolus vulgaris
Phvul.001G112200 5.0kb upstream 5.0kb upstream 5000 false Chr01: 32266969-32271968 Phaseolus vulgaris
Phvul.001G112200 5.0kb downstream 5.0kb downstream 7412 true Chr01: 32271969-32279380 Phaseolus vulgaris
Phvul.001G112200 5.0kb downstream 5.0kb downstream 5000 false Chr01: 32274381-32279380 Phaseolus vulgaris
Phvul.001G112200 10.0kb upstream 10.0kb upstream 12412 true Chr01: 32261969-32274380 Phaseolus vulgaris
Phvul.001G112200 10.0kb upstream 10.0kb upstream 10000 false Chr01: 32261969-32271968 Phaseolus vulgaris
Phvul.001G112200 10.0kb downstream 10.0kb downstream 12412 true Chr01: 32271969-32284380 Phaseolus vulgaris
Phvul.001G112200 10.0kb downstream 10.0kb downstream 10000 false Chr01: 32274381-32284380 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303235 5265 Fabidae View MSA
124067086 5270 Rosid View MSA
123745414 5271 Pentapetalae View MSA
122792337 5272 Eudicot View MSA
122048222 5273 Angiosperm View MSA
121347781 5274 Embryophyte View MSA
123427936 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 104.572 0.0 285.32 High High
cufflinks 28.6159 0.0 74.1537    
cufflinks 30.3062 0.0 78.4259    
cufflinks 35.0496 0.0 90.6051 High  
cufflinks 18.2877 0.0 48.4021    
cufflinks 6.73695 0.0 19.3779    
cufflinks 4.54678 0.0 13.6388   Low
cufflinks 2.25432 0.0 7.32587   Low
cufflinks 12.1534 0.0 33.1294    
cufflinks 56.6587 0.0 147.749 High High
cufflinks 12.6823 0.0 34.4937    

0 Strain