Gene : Phvul.001G102300 P. vulgaris v2.1
Defline:  (1 of 1) PTHR22778//PTHR22778:SF22 - OVARIAN CANCER GENE-2 PROTEIN-RELATED // SUBFAMILY NOT NAMED Genomic Order:  992
Name:  ? Phvul.001G102300 Secondary Identifier:  ? PAC:37167677
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-3841 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6612 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6614 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G102300 0.5kb upstream 0.5kb upstream 2377 true Chr01: 20911113-20913489 Phaseolus vulgaris
Phvul.001G102300 0.5kb upstream 0.5kb upstream 500 false Chr01: 20912990-20913489 Phaseolus vulgaris
Phvul.001G102300 0.5kb downstream 0.5kb downstream 2377 true Chr01: 20910613-20912989 Phaseolus vulgaris
Phvul.001G102300 0.5kb downstream 0.5kb downstream 500 false Chr01: 20910613-20911112 Phaseolus vulgaris
Phvul.001G102300 1.0kb upstream 1.0kb upstream 2877 true Chr01: 20911113-20913989 Phaseolus vulgaris
Phvul.001G102300 1.0kb upstream 1.0kb upstream 1000 false Chr01: 20912990-20913989 Phaseolus vulgaris
Phvul.001G102300 1.0kb downstream 1.0kb downstream 2877 true Chr01: 20910113-20912989 Phaseolus vulgaris
Phvul.001G102300 1.0kb downstream 1.0kb downstream 1000 false Chr01: 20910113-20911112 Phaseolus vulgaris
Phvul.001G102300 2.0kb upstream 2.0kb upstream 3877 true Chr01: 20911113-20914989 Phaseolus vulgaris
Phvul.001G102300 2.0kb upstream 2.0kb upstream 2000 false Chr01: 20912990-20914989 Phaseolus vulgaris
Phvul.001G102300 2.0kb downstream 2.0kb downstream 3877 true Chr01: 20909113-20912989 Phaseolus vulgaris
Phvul.001G102300 2.0kb downstream 2.0kb downstream 2000 false Chr01: 20909113-20911112 Phaseolus vulgaris
Phvul.001G102300 5.0kb upstream 5.0kb upstream 6877 true Chr01: 20911113-20917989 Phaseolus vulgaris
Phvul.001G102300 5.0kb upstream 5.0kb upstream 5000 false Chr01: 20912990-20917989 Phaseolus vulgaris
Phvul.001G102300 5.0kb downstream 5.0kb downstream 6877 true Chr01: 20906113-20912989 Phaseolus vulgaris
Phvul.001G102300 5.0kb downstream 5.0kb downstream 5000 false Chr01: 20906113-20911112 Phaseolus vulgaris
Phvul.001G102300 10.0kb upstream 10.0kb upstream 11877 true Chr01: 20911113-20922989 Phaseolus vulgaris
Phvul.001G102300 10.0kb upstream 10.0kb upstream 10000 false Chr01: 20912990-20922989 Phaseolus vulgaris
Phvul.001G102300 10.0kb downstream 10.0kb downstream 11877 true Chr01: 20901113-20912989 Phaseolus vulgaris
Phvul.001G102300 10.0kb downstream 10.0kb downstream 10000 false Chr01: 20901113-20911112 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309691 5265 Fabidae View MSA
124070831 5270 Rosid View MSA
123747932 5271 Pentapetalae View MSA
122794678 5272 Eudicot View MSA
122048467 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121348869 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.67823 0.0 19.583    
cufflinks 16.4588 0.0 44.3922    
cufflinks 6.80781 0.0 19.8498    
cufflinks 8.28789 0.0 23.9109    
cufflinks 3.76932 0.0 11.8983   Low
cufflinks 25.2733 0.0 66.1236   High
cufflinks 16.7083 0.0 44.8584    
cufflinks 10.9885 0.0 30.4646    
cufflinks 23.9703 0.0 62.8953   High
cufflinks 2.56615 0.0 8.42988   Low
cufflinks 6.20777 0.0 18.4902    

0 Strain