Gene : Phvul.001G088700 P. vulgaris v2.1
Defline:  (1 of 1) K13172 - serine/arginine repetitive matrix protein 2 (SRRM2, SRM300) Genomic Order:  863
Name:  ? Phvul.001G088700 Secondary Identifier:  ? PAC:37170531
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G088700 0.5kb upstream 0.5kb upstream 5360 true Chr01: 14063129-14068488 Phaseolus vulgaris
Phvul.001G088700 0.5kb upstream 0.5kb upstream 500 false Chr01: 14063129-14063628 Phaseolus vulgaris
Phvul.001G088700 0.5kb downstream 0.5kb downstream 5360 true Chr01: 14063629-14068988 Phaseolus vulgaris
Phvul.001G088700 0.5kb downstream 0.5kb downstream 500 false Chr01: 14068489-14068988 Phaseolus vulgaris
Phvul.001G088700 1.0kb upstream 1.0kb upstream 5860 true Chr01: 14062629-14068488 Phaseolus vulgaris
Phvul.001G088700 1.0kb upstream 1.0kb upstream 1000 false Chr01: 14062629-14063628 Phaseolus vulgaris
Phvul.001G088700 1.0kb downstream 1.0kb downstream 5860 true Chr01: 14063629-14069488 Phaseolus vulgaris
Phvul.001G088700 1.0kb downstream 1.0kb downstream 1000 false Chr01: 14068489-14069488 Phaseolus vulgaris
Phvul.001G088700 2.0kb upstream 2.0kb upstream 6860 true Chr01: 14061629-14068488 Phaseolus vulgaris
Phvul.001G088700 2.0kb upstream 2.0kb upstream 2000 false Chr01: 14061629-14063628 Phaseolus vulgaris
Phvul.001G088700 2.0kb downstream 2.0kb downstream 6860 true Chr01: 14063629-14070488 Phaseolus vulgaris
Phvul.001G088700 2.0kb downstream 2.0kb downstream 2000 false Chr01: 14068489-14070488 Phaseolus vulgaris
Phvul.001G088700 5.0kb upstream 5.0kb upstream 9860 true Chr01: 14058629-14068488 Phaseolus vulgaris
Phvul.001G088700 5.0kb upstream 5.0kb upstream 5000 false Chr01: 14058629-14063628 Phaseolus vulgaris
Phvul.001G088700 5.0kb downstream 5.0kb downstream 9860 true Chr01: 14063629-14073488 Phaseolus vulgaris
Phvul.001G088700 5.0kb downstream 5.0kb downstream 5000 false Chr01: 14068489-14073488 Phaseolus vulgaris
Phvul.001G088700 10.0kb upstream 10.0kb upstream 14860 true Chr01: 14053629-14068488 Phaseolus vulgaris
Phvul.001G088700 10.0kb upstream 10.0kb upstream 10000 false Chr01: 14053629-14063628 Phaseolus vulgaris
Phvul.001G088700 10.0kb downstream 10.0kb downstream 14860 true Chr01: 14063629-14078488 Phaseolus vulgaris
Phvul.001G088700 10.0kb downstream 10.0kb downstream 10000 false Chr01: 14068489-14078488 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310746 5265 Fabidae View MSA
124069039 5270 Rosid View MSA
123741456 5271 Pentapetalae View MSA
122788906 5272 Eudicot View MSA
122043009 5273 Angiosperm View MSA
121350185 5274 Embryophyte View MSA
123426025 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.6486 0.0 57.0096    
cufflinks 25.8672 0.0 68.9997    
cufflinks 33.2805 0.0 90.9727    
cufflinks 15.3804 0.0 39.792   Low
cufflinks 22.3282 0.0 58.4382    
cufflinks 34.5659 0.0 94.8125 High  
cufflinks 32.8323 0.0 90.1458 High  
cufflinks 30.527 0.0 83.2308 High  
cufflinks 34.6444 0.0 95.5231 High  
cufflinks 38.6034 0.0 106.143 High High
cufflinks 26.5103 0.0 70.5816    

0 Strain