Gene : Phvul.001G091400 P. vulgaris v2.1
Defline:  (1 of 3) PTHR31251:SF20 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A-RELATED Genomic Order:  890
Name:  ? Phvul.001G091400 Secondary Identifier:  ? PAC:37170885
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G091400 0.5kb upstream 0.5kb upstream 4153 true Chr01: 15552500-15556652 Phaseolus vulgaris
Phvul.001G091400 0.5kb upstream 0.5kb upstream 500 false Chr01: 15556153-15556652 Phaseolus vulgaris
Phvul.001G091400 0.5kb downstream 0.5kb downstream 4153 true Chr01: 15552000-15556152 Phaseolus vulgaris
Phvul.001G091400 0.5kb downstream 0.5kb downstream 500 false Chr01: 15552000-15552499 Phaseolus vulgaris
Phvul.001G091400 1.0kb upstream 1.0kb upstream 4653 true Chr01: 15552500-15557152 Phaseolus vulgaris
Phvul.001G091400 1.0kb upstream 1.0kb upstream 1000 false Chr01: 15556153-15557152 Phaseolus vulgaris
Phvul.001G091400 1.0kb downstream 1.0kb downstream 4653 true Chr01: 15551500-15556152 Phaseolus vulgaris
Phvul.001G091400 1.0kb downstream 1.0kb downstream 1000 false Chr01: 15551500-15552499 Phaseolus vulgaris
Phvul.001G091400 2.0kb upstream 2.0kb upstream 5653 true Chr01: 15552500-15558152 Phaseolus vulgaris
Phvul.001G091400 2.0kb upstream 2.0kb upstream 2000 false Chr01: 15556153-15558152 Phaseolus vulgaris
Phvul.001G091400 2.0kb downstream 2.0kb downstream 5653 true Chr01: 15550500-15556152 Phaseolus vulgaris
Phvul.001G091400 2.0kb downstream 2.0kb downstream 2000 false Chr01: 15550500-15552499 Phaseolus vulgaris
Phvul.001G091400 5.0kb upstream 5.0kb upstream 8653 true Chr01: 15552500-15561152 Phaseolus vulgaris
Phvul.001G091400 5.0kb upstream 5.0kb upstream 5000 false Chr01: 15556153-15561152 Phaseolus vulgaris
Phvul.001G091400 5.0kb downstream 5.0kb downstream 8653 true Chr01: 15547500-15556152 Phaseolus vulgaris
Phvul.001G091400 5.0kb downstream 5.0kb downstream 5000 false Chr01: 15547500-15552499 Phaseolus vulgaris
Phvul.001G091400 10.0kb upstream 10.0kb upstream 13653 true Chr01: 15552500-15566152 Phaseolus vulgaris
Phvul.001G091400 10.0kb upstream 10.0kb upstream 10000 false Chr01: 15556153-15566152 Phaseolus vulgaris
Phvul.001G091400 10.0kb downstream 10.0kb downstream 13653 true Chr01: 15542500-15556152 Phaseolus vulgaris
Phvul.001G091400 10.0kb downstream 10.0kb downstream 10000 false Chr01: 15542500-15552499 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121779477 5273 Angiosperm View MSA
122309811 5265 Fabidae View MSA
124070994 5270 Rosid View MSA
123743013 5271 Pentapetalae View MSA
122770483 5272 Eudicot View MSA
123428908 5275 Viridiplantae View MSA
121051136 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.54685 0.0 20.6152    
cufflinks 15.3407 0.0 39.9648   High
cufflinks 8.7523 0.0 23.5912    
cufflinks 7.55251 0.0 20.7596    
cufflinks 5.20214 0.0 14.7602   Low
cufflinks 7.45213 0.0 20.3771    
cufflinks 9.26498 0.0 24.8248    
cufflinks 8.78873 0.0 23.6223    
cufflinks 5.70862 0.0 15.9818   Low
cufflinks 6.28042 0.0 17.4828    
cufflinks 6.97729 0.0 19.256    

0 Strain