Gene : Phvul.001G094800 P. vulgaris v2.1
Defline:  (1 of 2) 2.1.1.190 - 23S rRNA (uracil(1939)-C(5))-methyltransferase / RNA uridine methyltransferase A Genomic Order:  919
Name:  ? Phvul.001G094800 Secondary Identifier:  ? PAC:37168049
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G094800 0.5kb upstream 0.5kb upstream 15196 true Chr01: 17685812-17701007 Phaseolus vulgaris
Phvul.001G094800 0.5kb upstream 0.5kb upstream 500 false Chr01: 17700508-17701007 Phaseolus vulgaris
Phvul.001G094800 0.5kb downstream 0.5kb downstream 15196 true Chr01: 17685312-17700507 Phaseolus vulgaris
Phvul.001G094800 0.5kb downstream 0.5kb downstream 500 false Chr01: 17685312-17685811 Phaseolus vulgaris
Phvul.001G094800 1.0kb upstream 1.0kb upstream 15696 true Chr01: 17685812-17701507 Phaseolus vulgaris
Phvul.001G094800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 17700508-17701507 Phaseolus vulgaris
Phvul.001G094800 1.0kb downstream 1.0kb downstream 15696 true Chr01: 17684812-17700507 Phaseolus vulgaris
Phvul.001G094800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 17684812-17685811 Phaseolus vulgaris
Phvul.001G094800 2.0kb upstream 2.0kb upstream 16696 true Chr01: 17685812-17702507 Phaseolus vulgaris
Phvul.001G094800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 17700508-17702507 Phaseolus vulgaris
Phvul.001G094800 2.0kb downstream 2.0kb downstream 16696 true Chr01: 17683812-17700507 Phaseolus vulgaris
Phvul.001G094800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 17683812-17685811 Phaseolus vulgaris
Phvul.001G094800 5.0kb upstream 5.0kb upstream 19696 true Chr01: 17685812-17705507 Phaseolus vulgaris
Phvul.001G094800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 17700508-17705507 Phaseolus vulgaris
Phvul.001G094800 5.0kb downstream 5.0kb downstream 19696 true Chr01: 17680812-17700507 Phaseolus vulgaris
Phvul.001G094800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 17680812-17685811 Phaseolus vulgaris
Phvul.001G094800 10.0kb upstream 10.0kb upstream 24696 true Chr01: 17685812-17710507 Phaseolus vulgaris
Phvul.001G094800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 17700508-17710507 Phaseolus vulgaris
Phvul.001G094800 10.0kb downstream 10.0kb downstream 24696 true Chr01: 17675812-17700507 Phaseolus vulgaris
Phvul.001G094800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 17675812-17685811 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303719 5265 Fabidae View MSA
124063737 5270 Rosid View MSA
123738222 5271 Pentapetalae View MSA
122796833 5272 Eudicot View MSA
122044630 5273 Angiosperm View MSA
121346457 5274 Embryophyte View MSA
123428846 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.82879 0.0 45.9357    
cufflinks 8.40083 0.0 35.227    
cufflinks 18.3962 0.0 121.717   High
cufflinks 5.40882 0.0 18.1193    
cufflinks 6.23096 0.0 34.9708    
cufflinks 16.5786 0.0 54.3247   High
cufflinks 2.84471 0.0 19.7302    
cufflinks 2.34612 0.0 14.3514   Low
cufflinks 1.56107 0.0 21.1261   Low
cufflinks 7.59597 0.0 31.6363    
cufflinks 4.36051 0.0 16.2153    

0 Strain