Gene : Phvul.001G078900 P. vulgaris v2.1
Defline:  (1 of 4) PTHR23023:SF37 - INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA2-RELATED Genomic Order:  797
Name:  ? Phvul.001G078900 Secondary Identifier:  ? PAC:37168908
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWYDQC-4 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G078900 0.5kb upstream 0.5kb upstream 6064 true Chr01: 11948480-11954543 Phaseolus vulgaris
Phvul.001G078900 0.5kb upstream 0.5kb upstream 500 false Chr01: 11948480-11948979 Phaseolus vulgaris
Phvul.001G078900 0.5kb downstream 0.5kb downstream 6064 true Chr01: 11948980-11955043 Phaseolus vulgaris
Phvul.001G078900 0.5kb downstream 0.5kb downstream 500 false Chr01: 11954544-11955043 Phaseolus vulgaris
Phvul.001G078900 1.0kb upstream 1.0kb upstream 6564 true Chr01: 11947980-11954543 Phaseolus vulgaris
Phvul.001G078900 1.0kb upstream 1.0kb upstream 1000 false Chr01: 11947980-11948979 Phaseolus vulgaris
Phvul.001G078900 1.0kb downstream 1.0kb downstream 6564 true Chr01: 11948980-11955543 Phaseolus vulgaris
Phvul.001G078900 1.0kb downstream 1.0kb downstream 1000 false Chr01: 11954544-11955543 Phaseolus vulgaris
Phvul.001G078900 2.0kb upstream 2.0kb upstream 7564 true Chr01: 11946980-11954543 Phaseolus vulgaris
Phvul.001G078900 2.0kb upstream 2.0kb upstream 2000 false Chr01: 11946980-11948979 Phaseolus vulgaris
Phvul.001G078900 2.0kb downstream 2.0kb downstream 7564 true Chr01: 11948980-11956543 Phaseolus vulgaris
Phvul.001G078900 2.0kb downstream 2.0kb downstream 2000 false Chr01: 11954544-11956543 Phaseolus vulgaris
Phvul.001G078900 5.0kb upstream 5.0kb upstream 10564 true Chr01: 11943980-11954543 Phaseolus vulgaris
Phvul.001G078900 5.0kb upstream 5.0kb upstream 5000 false Chr01: 11943980-11948979 Phaseolus vulgaris
Phvul.001G078900 5.0kb downstream 5.0kb downstream 10564 true Chr01: 11948980-11959543 Phaseolus vulgaris
Phvul.001G078900 5.0kb downstream 5.0kb downstream 5000 false Chr01: 11954544-11959543 Phaseolus vulgaris
Phvul.001G078900 10.0kb upstream 10.0kb upstream 15564 true Chr01: 11938980-11954543 Phaseolus vulgaris
Phvul.001G078900 10.0kb upstream 10.0kb upstream 10000 false Chr01: 11938980-11948979 Phaseolus vulgaris
Phvul.001G078900 10.0kb downstream 10.0kb downstream 15564 true Chr01: 11948980-11964543 Phaseolus vulgaris
Phvul.001G078900 10.0kb downstream 10.0kb downstream 10000 false Chr01: 11954544-11964543 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311336 5265 Fabidae View MSA
124069370 5270 Rosid View MSA
123747095 5271 Pentapetalae View MSA
122790040 5272 Eudicot View MSA
122050610 5273 Angiosperm View MSA
121351632 5274 Embryophyte View MSA
123426700 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0400535 0.0 0.177051 Low  
cufflinks 0.0509747 0.0 0.220639 Low  
cufflinks 0.164159 0.0 0.643786 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.228418 0.0 0.874636 Low  
cufflinks 0.0876651 0.0 0.361567 Low  
cufflinks 0.631647 0.0 2.19808   High
cufflinks 2.33854 0.0 7.00801   High
cufflinks 0.0163831 0.0 0.0795751 Low Low
cufflinks 0.121887 0.0 0.490099 Low  
cufflinks 0.178643 0.0 0.697404 Low  

0 Strain