Gene : Phvul.001G084000 P. vulgaris v2.1
Defline:  (1 of 180) PF00847 - AP2 domain (AP2) Genomic Order:  817
Name:  ? Phvul.001G084000 Secondary Identifier:  ? PAC:37169565
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G084000 0.5kb upstream 0.5kb upstream 2618 true Chr01: 12888838-12891455 Phaseolus vulgaris
Phvul.001G084000 0.5kb upstream 0.5kb upstream 500 false Chr01: 12890956-12891455 Phaseolus vulgaris
Phvul.001G084000 0.5kb downstream 0.5kb downstream 2618 true Chr01: 12888338-12890955 Phaseolus vulgaris
Phvul.001G084000 0.5kb downstream 0.5kb downstream 500 false Chr01: 12888338-12888837 Phaseolus vulgaris
Phvul.001G084000 1.0kb upstream 1.0kb upstream 3118 true Chr01: 12888838-12891955 Phaseolus vulgaris
Phvul.001G084000 1.0kb upstream 1.0kb upstream 1000 false Chr01: 12890956-12891955 Phaseolus vulgaris
Phvul.001G084000 1.0kb downstream 1.0kb downstream 3118 true Chr01: 12887838-12890955 Phaseolus vulgaris
Phvul.001G084000 1.0kb downstream 1.0kb downstream 1000 false Chr01: 12887838-12888837 Phaseolus vulgaris
Phvul.001G084000 2.0kb upstream 2.0kb upstream 4118 true Chr01: 12888838-12892955 Phaseolus vulgaris
Phvul.001G084000 2.0kb upstream 2.0kb upstream 2000 false Chr01: 12890956-12892955 Phaseolus vulgaris
Phvul.001G084000 2.0kb downstream 2.0kb downstream 4118 true Chr01: 12886838-12890955 Phaseolus vulgaris
Phvul.001G084000 2.0kb downstream 2.0kb downstream 2000 false Chr01: 12886838-12888837 Phaseolus vulgaris
Phvul.001G084000 5.0kb upstream 5.0kb upstream 7118 true Chr01: 12888838-12895955 Phaseolus vulgaris
Phvul.001G084000 5.0kb upstream 5.0kb upstream 5000 false Chr01: 12890956-12895955 Phaseolus vulgaris
Phvul.001G084000 5.0kb downstream 5.0kb downstream 7118 true Chr01: 12883838-12890955 Phaseolus vulgaris
Phvul.001G084000 5.0kb downstream 5.0kb downstream 5000 false Chr01: 12883838-12888837 Phaseolus vulgaris
Phvul.001G084000 10.0kb upstream 10.0kb upstream 12118 true Chr01: 12888838-12900955 Phaseolus vulgaris
Phvul.001G084000 10.0kb upstream 10.0kb upstream 10000 false Chr01: 12890956-12900955 Phaseolus vulgaris
Phvul.001G084000 10.0kb downstream 10.0kb downstream 12118 true Chr01: 12878838-12890955 Phaseolus vulgaris
Phvul.001G084000 10.0kb downstream 10.0kb downstream 10000 false Chr01: 12878838-12888837 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122250871 5265 Fabidae Singleton cluster - no MSA
124073259 5270 Rosid View MSA
123738073 5271 Pentapetalae View MSA
122789741 5272 Eudicot View MSA
122050930 5273 Angiosperm View MSA
123428898 5275 Viridiplantae View MSA
121351000 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.1214 0.0 54.7791   High
cufflinks 4.09141 0.0 13.1456    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.26105 0.0 4.57821    
cufflinks 3.93936 0.0 12.8076    
cufflinks 0.159852 0.0 0.68975 Low Low
cufflinks 0.621462 0.0 2.39028    
cufflinks 0.396342 0.0 1.57895 Low  
cufflinks 0.383905 0.0 1.53327 Low  
cufflinks 0.296158 0.0 1.2167 Low  
cufflinks 1.80801 0.0 6.40007    

0 Strain