Gene : Phvul.001G084800 P. vulgaris v2.1
Defline:  (1 of 1) KOG2164 - Predicted E3 ubiquitin ligase Genomic Order:  823
Name:  ? Phvul.001G084800 Secondary Identifier:  ? PAC:37170690
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G084800 0.5kb upstream 0.5kb upstream 10458 true Chr01: 13084303-13094760 Phaseolus vulgaris
Phvul.001G084800 0.5kb upstream 0.5kb upstream 500 false Chr01: 13084303-13084802 Phaseolus vulgaris
Phvul.001G084800 0.5kb downstream 0.5kb downstream 10458 true Chr01: 13084803-13095260 Phaseolus vulgaris
Phvul.001G084800 0.5kb downstream 0.5kb downstream 500 false Chr01: 13094761-13095260 Phaseolus vulgaris
Phvul.001G084800 1.0kb upstream 1.0kb upstream 10958 true Chr01: 13083803-13094760 Phaseolus vulgaris
Phvul.001G084800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 13083803-13084802 Phaseolus vulgaris
Phvul.001G084800 1.0kb downstream 1.0kb downstream 10958 true Chr01: 13084803-13095760 Phaseolus vulgaris
Phvul.001G084800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 13094761-13095760 Phaseolus vulgaris
Phvul.001G084800 2.0kb upstream 2.0kb upstream 11958 true Chr01: 13082803-13094760 Phaseolus vulgaris
Phvul.001G084800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 13082803-13084802 Phaseolus vulgaris
Phvul.001G084800 2.0kb downstream 2.0kb downstream 11958 true Chr01: 13084803-13096760 Phaseolus vulgaris
Phvul.001G084800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 13094761-13096760 Phaseolus vulgaris
Phvul.001G084800 5.0kb upstream 5.0kb upstream 14958 true Chr01: 13079803-13094760 Phaseolus vulgaris
Phvul.001G084800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 13079803-13084802 Phaseolus vulgaris
Phvul.001G084800 5.0kb downstream 5.0kb downstream 14958 true Chr01: 13084803-13099760 Phaseolus vulgaris
Phvul.001G084800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 13094761-13099760 Phaseolus vulgaris
Phvul.001G084800 10.0kb upstream 10.0kb upstream 19958 true Chr01: 13074803-13094760 Phaseolus vulgaris
Phvul.001G084800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 13074803-13084802 Phaseolus vulgaris
Phvul.001G084800 10.0kb downstream 10.0kb downstream 19958 true Chr01: 13084803-13104760 Phaseolus vulgaris
Phvul.001G084800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 13094761-13104760 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306700 5265 Fabidae View MSA
124060786 5270 Rosid View MSA
123742061 5271 Pentapetalae View MSA
122793495 5272 Eudicot View MSA
122042542 5273 Angiosperm View MSA
121344560 5274 Embryophyte View MSA
123423758 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.7389 0.0 45.8549    
cufflinks 18.5108 0.0 47.8541    
cufflinks 20.7861 0.0 53.8426    
cufflinks 14.5871 0.0 37.7958   Low
cufflinks 19.9704 0.0 51.6355    
cufflinks 18.1371 0.0 46.8862    
cufflinks 20.5415 0.0 53.1724    
cufflinks 19.4753 0.0 50.4024    
cufflinks 24.6065 0.0 63.9372    
cufflinks 34.7898 0.0 91.8999   High
cufflinks 16.8758 0.0 43.6343    

0 Strain