Gene : Phvul.001G059300 P. vulgaris v2.1
Defline:  (1 of 2) PTHR22937//PTHR22937:SF53 - RING FINGER CONTAINING PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  601
Name:  ? Phvul.001G059300 Secondary Identifier:  ? PAC:37168423
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G059300 0.5kb upstream 0.5kb upstream 5839 true Chr01: 6832050-6837888 Phaseolus vulgaris
Phvul.001G059300 0.5kb upstream 0.5kb upstream 500 false Chr01: 6837389-6837888 Phaseolus vulgaris
Phvul.001G059300 0.5kb downstream 0.5kb downstream 5839 true Chr01: 6831550-6837388 Phaseolus vulgaris
Phvul.001G059300 0.5kb downstream 0.5kb downstream 500 false Chr01: 6831550-6832049 Phaseolus vulgaris
Phvul.001G059300 1.0kb upstream 1.0kb upstream 6339 true Chr01: 6832050-6838388 Phaseolus vulgaris
Phvul.001G059300 1.0kb upstream 1.0kb upstream 1000 false Chr01: 6837389-6838388 Phaseolus vulgaris
Phvul.001G059300 1.0kb downstream 1.0kb downstream 6339 true Chr01: 6831050-6837388 Phaseolus vulgaris
Phvul.001G059300 1.0kb downstream 1.0kb downstream 1000 false Chr01: 6831050-6832049 Phaseolus vulgaris
Phvul.001G059300 2.0kb upstream 2.0kb upstream 7339 true Chr01: 6832050-6839388 Phaseolus vulgaris
Phvul.001G059300 2.0kb upstream 2.0kb upstream 2000 false Chr01: 6837389-6839388 Phaseolus vulgaris
Phvul.001G059300 2.0kb downstream 2.0kb downstream 7339 true Chr01: 6830050-6837388 Phaseolus vulgaris
Phvul.001G059300 2.0kb downstream 2.0kb downstream 2000 false Chr01: 6830050-6832049 Phaseolus vulgaris
Phvul.001G059300 5.0kb upstream 5.0kb upstream 10339 true Chr01: 6832050-6842388 Phaseolus vulgaris
Phvul.001G059300 5.0kb upstream 5.0kb upstream 5000 false Chr01: 6837389-6842388 Phaseolus vulgaris
Phvul.001G059300 5.0kb downstream 5.0kb downstream 10339 true Chr01: 6827050-6837388 Phaseolus vulgaris
Phvul.001G059300 5.0kb downstream 5.0kb downstream 5000 false Chr01: 6827050-6832049 Phaseolus vulgaris
Phvul.001G059300 10.0kb upstream 10.0kb upstream 15339 true Chr01: 6832050-6847388 Phaseolus vulgaris
Phvul.001G059300 10.0kb upstream 10.0kb upstream 10000 false Chr01: 6837389-6847388 Phaseolus vulgaris
Phvul.001G059300 10.0kb downstream 10.0kb downstream 15339 true Chr01: 6822050-6837388 Phaseolus vulgaris
Phvul.001G059300 10.0kb downstream 10.0kb downstream 10000 false Chr01: 6822050-6832049 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310011 5265 Fabidae View MSA
124062589 5270 Rosid View MSA
123746879 5271 Pentapetalae View MSA
122795364 5272 Eudicot View MSA
122045356 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121351500 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.9781 0.0 36.5195   High
cufflinks 4.17719 0.0 12.0128    
cufflinks 2.75377 0.0 8.2801   Low
cufflinks 4.30283 0.0 12.4139    
cufflinks 4.83196 0.0 13.8566    
cufflinks 3.13012 0.0 9.28358   Low
cufflinks 8.3763 0.0 22.5772   High
cufflinks 5.77657 0.0 16.0243    
cufflinks 6.8312 0.0 18.7484    
cufflinks 5.90756 0.0 16.4746    
cufflinks 4.62837 0.0 13.2524    

0 Strain