Gene : Phvul.001G057700 P. vulgaris v2.1
Defline:  (1 of 2) K11858 - ubiquitin carboxyl-terminal hydrolase 48 [EC:3.4.19.12] (USP48) Genomic Order:  584
Name:  ? Phvul.001G057700 Secondary Identifier:  ? PAC:37168422
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G057700 0.5kb upstream 0.5kb upstream 10874 true Chr01: 6541406-6552279 Phaseolus vulgaris
Phvul.001G057700 0.5kb upstream 0.5kb upstream 500 false Chr01: 6551780-6552279 Phaseolus vulgaris
Phvul.001G057700 0.5kb downstream 0.5kb downstream 10874 true Chr01: 6540906-6551779 Phaseolus vulgaris
Phvul.001G057700 0.5kb downstream 0.5kb downstream 500 false Chr01: 6540906-6541405 Phaseolus vulgaris
Phvul.001G057700 1.0kb upstream 1.0kb upstream 11374 true Chr01: 6541406-6552779 Phaseolus vulgaris
Phvul.001G057700 1.0kb upstream 1.0kb upstream 1000 false Chr01: 6551780-6552779 Phaseolus vulgaris
Phvul.001G057700 1.0kb downstream 1.0kb downstream 11374 true Chr01: 6540406-6551779 Phaseolus vulgaris
Phvul.001G057700 1.0kb downstream 1.0kb downstream 1000 false Chr01: 6540406-6541405 Phaseolus vulgaris
Phvul.001G057700 2.0kb upstream 2.0kb upstream 12374 true Chr01: 6541406-6553779 Phaseolus vulgaris
Phvul.001G057700 2.0kb upstream 2.0kb upstream 2000 false Chr01: 6551780-6553779 Phaseolus vulgaris
Phvul.001G057700 2.0kb downstream 2.0kb downstream 12374 true Chr01: 6539406-6551779 Phaseolus vulgaris
Phvul.001G057700 2.0kb downstream 2.0kb downstream 2000 false Chr01: 6539406-6541405 Phaseolus vulgaris
Phvul.001G057700 5.0kb upstream 5.0kb upstream 15374 true Chr01: 6541406-6556779 Phaseolus vulgaris
Phvul.001G057700 5.0kb upstream 5.0kb upstream 5000 false Chr01: 6551780-6556779 Phaseolus vulgaris
Phvul.001G057700 5.0kb downstream 5.0kb downstream 15374 true Chr01: 6536406-6551779 Phaseolus vulgaris
Phvul.001G057700 5.0kb downstream 5.0kb downstream 5000 false Chr01: 6536406-6541405 Phaseolus vulgaris
Phvul.001G057700 10.0kb upstream 10.0kb upstream 20374 true Chr01: 6541406-6561779 Phaseolus vulgaris
Phvul.001G057700 10.0kb upstream 10.0kb upstream 10000 false Chr01: 6551780-6561779 Phaseolus vulgaris
Phvul.001G057700 10.0kb downstream 10.0kb downstream 20374 true Chr01: 6531406-6551779 Phaseolus vulgaris
Phvul.001G057700 10.0kb downstream 10.0kb downstream 10000 false Chr01: 6531406-6541405 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309346 5265 Fabidae View MSA
124061105 5270 Rosid View MSA
123737651 5271 Pentapetalae View MSA
122791193 5272 Eudicot View MSA
122043849 5273 Angiosperm View MSA
121347383 5274 Embryophyte View MSA
123427406 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.39692 0.0 1.38713 Low Low
cufflinks 0.820028 0.0 2.65248    
cufflinks 0.97007 0.0 3.06512    
cufflinks 0.307825 0.0 1.11755 Low Low
cufflinks 0.788993 0.0 2.5883    
cufflinks 1.46906 0.0 4.44071   High
cufflinks 0.844098 0.0 2.72704    
cufflinks 1.24911 0.0 3.82872    
cufflinks 0.736944 0.0 2.42719    
cufflinks 2.22708 0.0 6.43732   High
cufflinks 0.803583 0.0 2.62726    

0 Strain