Gene : Phvul.001G057900 P. vulgaris v2.1
Defline:  (1 of 1) 2.1.1.177 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase / rRNA large subunit methyltransferase H Genomic Order:  586
Name:  ? Phvul.001G057900 Secondary Identifier:  ? PAC:37169249
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G057900 0.5kb upstream 0.5kb upstream 4072 true Chr01: 6567809-6571880 Phaseolus vulgaris
Phvul.001G057900 0.5kb upstream 0.5kb upstream 500 false Chr01: 6571381-6571880 Phaseolus vulgaris
Phvul.001G057900 0.5kb downstream 0.5kb downstream 4072 true Chr01: 6567309-6571380 Phaseolus vulgaris
Phvul.001G057900 0.5kb downstream 0.5kb downstream 500 false Chr01: 6567309-6567808 Phaseolus vulgaris
Phvul.001G057900 1.0kb upstream 1.0kb upstream 4572 true Chr01: 6567809-6572380 Phaseolus vulgaris
Phvul.001G057900 1.0kb upstream 1.0kb upstream 1000 false Chr01: 6571381-6572380 Phaseolus vulgaris
Phvul.001G057900 1.0kb downstream 1.0kb downstream 4572 true Chr01: 6566809-6571380 Phaseolus vulgaris
Phvul.001G057900 1.0kb downstream 1.0kb downstream 1000 false Chr01: 6566809-6567808 Phaseolus vulgaris
Phvul.001G057900 2.0kb upstream 2.0kb upstream 5572 true Chr01: 6567809-6573380 Phaseolus vulgaris
Phvul.001G057900 2.0kb upstream 2.0kb upstream 2000 false Chr01: 6571381-6573380 Phaseolus vulgaris
Phvul.001G057900 2.0kb downstream 2.0kb downstream 5572 true Chr01: 6565809-6571380 Phaseolus vulgaris
Phvul.001G057900 2.0kb downstream 2.0kb downstream 2000 false Chr01: 6565809-6567808 Phaseolus vulgaris
Phvul.001G057900 5.0kb upstream 5.0kb upstream 8572 true Chr01: 6567809-6576380 Phaseolus vulgaris
Phvul.001G057900 5.0kb upstream 5.0kb upstream 5000 false Chr01: 6571381-6576380 Phaseolus vulgaris
Phvul.001G057900 5.0kb downstream 5.0kb downstream 8572 true Chr01: 6562809-6571380 Phaseolus vulgaris
Phvul.001G057900 5.0kb downstream 5.0kb downstream 5000 false Chr01: 6562809-6567808 Phaseolus vulgaris
Phvul.001G057900 10.0kb upstream 10.0kb upstream 13572 true Chr01: 6567809-6581380 Phaseolus vulgaris
Phvul.001G057900 10.0kb upstream 10.0kb upstream 10000 false Chr01: 6571381-6581380 Phaseolus vulgaris
Phvul.001G057900 10.0kb downstream 10.0kb downstream 13572 true Chr01: 6557809-6571380 Phaseolus vulgaris
Phvul.001G057900 10.0kb downstream 10.0kb downstream 10000 false Chr01: 6557809-6567808 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041237 5273 Angiosperm View MSA
122300345 5265 Fabidae View MSA
124065291 5270 Rosid View MSA
123737666 5271 Pentapetalae View MSA
122786404 5272 Eudicot View MSA
121344768 5274 Embryophyte View MSA
123424832 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.21006 0.0 5.47122    
cufflinks 2.50813 0.0 10.159    
cufflinks 3.42711 0.0 15.8224   High
cufflinks 1.81435 0.0 10.0002    
cufflinks 2.2432 0.0 11.821    
cufflinks 3.04873 0.0 14.3172   High
cufflinks 0.956474 0.0 6.01792    
cufflinks 0.98186 0.0 6.04331    
cufflinks 1.41066 0.0 8.13477    
cufflinks 0.632098 0.0 4.43095   Low
cufflinks 1.71674 0.0 9.61868    

0 Strain