Gene : Phvul.001G060300 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11915//PTHR11915:SF275 - SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  611
Name:  ? Phvul.001G060300 Secondary Identifier:  ? PAC:37168183
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G060300 0.5kb upstream 0.5kb upstream 13093 true Chr01: 7072550-7085642 Phaseolus vulgaris
Phvul.001G060300 0.5kb upstream 0.5kb upstream 500 false Chr01: 7072550-7073049 Phaseolus vulgaris
Phvul.001G060300 0.5kb downstream 0.5kb downstream 13093 true Chr01: 7073050-7086142 Phaseolus vulgaris
Phvul.001G060300 0.5kb downstream 0.5kb downstream 500 false Chr01: 7085643-7086142 Phaseolus vulgaris
Phvul.001G060300 1.0kb upstream 1.0kb upstream 13593 true Chr01: 7072050-7085642 Phaseolus vulgaris
Phvul.001G060300 1.0kb upstream 1.0kb upstream 1000 false Chr01: 7072050-7073049 Phaseolus vulgaris
Phvul.001G060300 1.0kb downstream 1.0kb downstream 13593 true Chr01: 7073050-7086642 Phaseolus vulgaris
Phvul.001G060300 1.0kb downstream 1.0kb downstream 1000 false Chr01: 7085643-7086642 Phaseolus vulgaris
Phvul.001G060300 2.0kb upstream 2.0kb upstream 14593 true Chr01: 7071050-7085642 Phaseolus vulgaris
Phvul.001G060300 2.0kb upstream 2.0kb upstream 2000 false Chr01: 7071050-7073049 Phaseolus vulgaris
Phvul.001G060300 2.0kb downstream 2.0kb downstream 14593 true Chr01: 7073050-7087642 Phaseolus vulgaris
Phvul.001G060300 2.0kb downstream 2.0kb downstream 2000 false Chr01: 7085643-7087642 Phaseolus vulgaris
Phvul.001G060300 5.0kb upstream 5.0kb upstream 17593 true Chr01: 7068050-7085642 Phaseolus vulgaris
Phvul.001G060300 5.0kb upstream 5.0kb upstream 5000 false Chr01: 7068050-7073049 Phaseolus vulgaris
Phvul.001G060300 5.0kb downstream 5.0kb downstream 17593 true Chr01: 7073050-7090642 Phaseolus vulgaris
Phvul.001G060300 5.0kb downstream 5.0kb downstream 5000 false Chr01: 7085643-7090642 Phaseolus vulgaris
Phvul.001G060300 10.0kb upstream 10.0kb upstream 22593 true Chr01: 7063050-7085642 Phaseolus vulgaris
Phvul.001G060300 10.0kb upstream 10.0kb upstream 10000 false Chr01: 7063050-7073049 Phaseolus vulgaris
Phvul.001G060300 10.0kb downstream 10.0kb downstream 22593 true Chr01: 7073050-7095642 Phaseolus vulgaris
Phvul.001G060300 10.0kb downstream 10.0kb downstream 10000 false Chr01: 7085643-7095642 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309861 5265 Fabidae View MSA
124069272 5270 Rosid View MSA
123743783 5271 Pentapetalae View MSA
122794213 5272 Eudicot View MSA
122043215 5273 Angiosperm View MSA
121351769 5274 Embryophyte View MSA
123428094 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.897147 0.0 3.02291   Low
cufflinks 2.39702 0.0 6.81299    
cufflinks 8.1298 0.0 24.5689    
cufflinks 1.33827 0.0 4.93413   Low
cufflinks 4.20287 0.0 13.3863    
cufflinks 10.8742 0.0 33.2923   High
cufflinks 9.0869 0.0 27.2031    
cufflinks 8.12855 0.0 24.0516    
cufflinks 8.15279 0.0 23.9829    
cufflinks 7.65271 0.0 22.0516    
cufflinks 3.19629 0.0 10.2582    

0 Strain