Gene : Phvul.001G062000 P. vulgaris v2.1
Defline:  (1 of 2) PTHR23076:SF40 - ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 11, CHLOROPLASTIC/MITOCHONDRIAL Genomic Order:  628
Name:  ? Phvul.001G062000 Secondary Identifier:  ? PAC:37168563
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G062000 0.5kb upstream 0.5kb upstream 17349 true Chr01: 7394787-7412135 Phaseolus vulgaris
Phvul.001G062000 0.5kb upstream 0.5kb upstream 500 false Chr01: 7394787-7395286 Phaseolus vulgaris
Phvul.001G062000 0.5kb downstream 0.5kb downstream 17349 true Chr01: 7395287-7412635 Phaseolus vulgaris
Phvul.001G062000 0.5kb downstream 0.5kb downstream 500 false Chr01: 7412136-7412635 Phaseolus vulgaris
Phvul.001G062000 1.0kb upstream 1.0kb upstream 17849 true Chr01: 7394287-7412135 Phaseolus vulgaris
Phvul.001G062000 1.0kb upstream 1.0kb upstream 1000 false Chr01: 7394287-7395286 Phaseolus vulgaris
Phvul.001G062000 1.0kb downstream 1.0kb downstream 17849 true Chr01: 7395287-7413135 Phaseolus vulgaris
Phvul.001G062000 1.0kb downstream 1.0kb downstream 1000 false Chr01: 7412136-7413135 Phaseolus vulgaris
Phvul.001G062000 2.0kb upstream 2.0kb upstream 18849 true Chr01: 7393287-7412135 Phaseolus vulgaris
Phvul.001G062000 2.0kb upstream 2.0kb upstream 2000 false Chr01: 7393287-7395286 Phaseolus vulgaris
Phvul.001G062000 2.0kb downstream 2.0kb downstream 18849 true Chr01: 7395287-7414135 Phaseolus vulgaris
Phvul.001G062000 2.0kb downstream 2.0kb downstream 2000 false Chr01: 7412136-7414135 Phaseolus vulgaris
Phvul.001G062000 5.0kb upstream 5.0kb upstream 21849 true Chr01: 7390287-7412135 Phaseolus vulgaris
Phvul.001G062000 5.0kb upstream 5.0kb upstream 5000 false Chr01: 7390287-7395286 Phaseolus vulgaris
Phvul.001G062000 5.0kb downstream 5.0kb downstream 21849 true Chr01: 7395287-7417135 Phaseolus vulgaris
Phvul.001G062000 5.0kb downstream 5.0kb downstream 5000 false Chr01: 7412136-7417135 Phaseolus vulgaris
Phvul.001G062000 10.0kb upstream 10.0kb upstream 26849 true Chr01: 7385287-7412135 Phaseolus vulgaris
Phvul.001G062000 10.0kb upstream 10.0kb upstream 10000 false Chr01: 7385287-7395286 Phaseolus vulgaris
Phvul.001G062000 10.0kb downstream 10.0kb downstream 26849 true Chr01: 7395287-7422135 Phaseolus vulgaris
Phvul.001G062000 10.0kb downstream 10.0kb downstream 10000 false Chr01: 7412136-7422135 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299271 5265 Fabidae View MSA
124073797 5270 Rosid View MSA
123744222 5271 Pentapetalae View MSA
122793624 5272 Eudicot View MSA
122043793 5273 Angiosperm View MSA
121346284 5274 Embryophyte View MSA
123428638 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.58043 0.0 19.8135    
cufflinks 9.74779 0.0 25.269    
cufflinks 23.1624 0.0 60.865   High
cufflinks 6.18424 0.0 16.4137   Low
cufflinks 9.16153 0.0 23.8189    
cufflinks 19.4801 0.0 50.7894   High
cufflinks 9.47546 0.0 24.5698    
cufflinks 9.06805 0.0 23.5326    
cufflinks 8.51 0.0 22.1478    
cufflinks 13.2471 0.0 34.2459    
cufflinks 9.3363 0.0 24.2387    

0 Strain