Gene : Phvul.001G048900 P. vulgaris v2.1
Defline:  (1 of 15) PF07714//PF13947 - Protein tyrosine kinase (Pkinase_Tyr) // Wall-associated receptor kinase galacturonan-binding (GUB_WAK_bind) Genomic Order:  493
Name:  ? Phvul.001G048900 Secondary Identifier:  ? PAC:37167737
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-7409 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G048900 0.5kb upstream 0.5kb upstream 7230 true Chr01: 5215594-5222823 Phaseolus vulgaris
Phvul.001G048900 0.5kb upstream 0.5kb upstream 500 false Chr01: 5215594-5216093 Phaseolus vulgaris
Phvul.001G048900 0.5kb downstream 0.5kb downstream 7230 true Chr01: 5216094-5223323 Phaseolus vulgaris
Phvul.001G048900 0.5kb downstream 0.5kb downstream 500 false Chr01: 5222824-5223323 Phaseolus vulgaris
Phvul.001G048900 1.0kb upstream 1.0kb upstream 7730 true Chr01: 5215094-5222823 Phaseolus vulgaris
Phvul.001G048900 1.0kb upstream 1.0kb upstream 1000 false Chr01: 5215094-5216093 Phaseolus vulgaris
Phvul.001G048900 1.0kb downstream 1.0kb downstream 7730 true Chr01: 5216094-5223823 Phaseolus vulgaris
Phvul.001G048900 1.0kb downstream 1.0kb downstream 1000 false Chr01: 5222824-5223823 Phaseolus vulgaris
Phvul.001G048900 2.0kb upstream 2.0kb upstream 8730 true Chr01: 5214094-5222823 Phaseolus vulgaris
Phvul.001G048900 2.0kb upstream 2.0kb upstream 2000 false Chr01: 5214094-5216093 Phaseolus vulgaris
Phvul.001G048900 2.0kb downstream 2.0kb downstream 8730 true Chr01: 5216094-5224823 Phaseolus vulgaris
Phvul.001G048900 2.0kb downstream 2.0kb downstream 2000 false Chr01: 5222824-5224823 Phaseolus vulgaris
Phvul.001G048900 5.0kb upstream 5.0kb upstream 11730 true Chr01: 5211094-5222823 Phaseolus vulgaris
Phvul.001G048900 5.0kb upstream 5.0kb upstream 5000 false Chr01: 5211094-5216093 Phaseolus vulgaris
Phvul.001G048900 5.0kb downstream 5.0kb downstream 11730 true Chr01: 5216094-5227823 Phaseolus vulgaris
Phvul.001G048900 5.0kb downstream 5.0kb downstream 5000 false Chr01: 5222824-5227823 Phaseolus vulgaris
Phvul.001G048900 10.0kb upstream 10.0kb upstream 16730 true Chr01: 5206094-5222823 Phaseolus vulgaris
Phvul.001G048900 10.0kb upstream 10.0kb upstream 10000 false Chr01: 5206094-5216093 Phaseolus vulgaris
Phvul.001G048900 10.0kb downstream 10.0kb downstream 16730 true Chr01: 5216094-5232823 Phaseolus vulgaris
Phvul.001G048900 10.0kb downstream 10.0kb downstream 10000 false Chr01: 5222824-5232823 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314435 5265 Fabidae View MSA
124074937 5270 Rosid View MSA
123753765 5271 Pentapetalae View MSA
122797900 5272 Eudicot View MSA
122051692 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.594436 0.0 2.16679   High
cufflinks 0.224962 0.0 0.888531 Low  
cufflinks 0.043383 0.0 0.197766 Low Low
cufflinks 0.444039 0.0 1.67642 Low  
cufflinks 0.205988 0.0 0.823912 Low  
cufflinks 0.0500732 0.0 0.225585 Low  
cufflinks 0.115404 0.0 0.481024 Low  
cufflinks 0.0474512 0.0 0.213716 Low  
cufflinks 0.0351179 0.0 0.164918 Low Low
cufflinks 1.25808 0.0 4.2618   High
cufflinks 0.107596 0.0 0.453238 Low  

0 Strain