Gene : Phvul.001G049500 P. vulgaris v2.1

Defline:  (1 of 3) PTHR12294 - EF HAND DOMAIN FAMILY A1,A2-RELATED Genomic Order:  499
Name:  ? Phvul.001G049500 Secondary Identifier:  ? PAC:37170032

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G049500 0.5kb upstream 0.5kb upstream 5259 true Chr01: 5328597-5333855 Phaseolus vulgaris
Phvul.001G049500 0.5kb upstream 0.5kb upstream 500 false Chr01: 5328597-5329096 Phaseolus vulgaris
Phvul.001G049500 0.5kb downstream 0.5kb downstream 5259 true Chr01: 5329097-5334355 Phaseolus vulgaris
Phvul.001G049500 0.5kb downstream 0.5kb downstream 500 false Chr01: 5333856-5334355 Phaseolus vulgaris
Phvul.001G049500 1.0kb upstream 1.0kb upstream 5759 true Chr01: 5328097-5333855 Phaseolus vulgaris
Phvul.001G049500 1.0kb upstream 1.0kb upstream 1000 false Chr01: 5328097-5329096 Phaseolus vulgaris
Phvul.001G049500 1.0kb downstream 1.0kb downstream 5759 true Chr01: 5329097-5334855 Phaseolus vulgaris
Phvul.001G049500 1.0kb downstream 1.0kb downstream 1000 false Chr01: 5333856-5334855 Phaseolus vulgaris
Phvul.001G049500 2.0kb upstream 2.0kb upstream 6759 true Chr01: 5327097-5333855 Phaseolus vulgaris
Phvul.001G049500 2.0kb upstream 2.0kb upstream 2000 false Chr01: 5327097-5329096 Phaseolus vulgaris
Phvul.001G049500 2.0kb downstream 2.0kb downstream 6759 true Chr01: 5329097-5335855 Phaseolus vulgaris
Phvul.001G049500 2.0kb downstream 2.0kb downstream 2000 false Chr01: 5333856-5335855 Phaseolus vulgaris
Phvul.001G049500 5.0kb upstream 5.0kb upstream 9759 true Chr01: 5324097-5333855 Phaseolus vulgaris
Phvul.001G049500 5.0kb upstream 5.0kb upstream 5000 false Chr01: 5324097-5329096 Phaseolus vulgaris
Phvul.001G049500 5.0kb downstream 5.0kb downstream 9759 true Chr01: 5329097-5338855 Phaseolus vulgaris
Phvul.001G049500 5.0kb downstream 5.0kb downstream 5000 false Chr01: 5333856-5338855 Phaseolus vulgaris
Phvul.001G049500 10.0kb upstream 10.0kb upstream 14759 true Chr01: 5319097-5333855 Phaseolus vulgaris
Phvul.001G049500 10.0kb upstream 10.0kb upstream 10000 false Chr01: 5319097-5329096 Phaseolus vulgaris
Phvul.001G049500 10.0kb downstream 10.0kb downstream 14759 true Chr01: 5329097-5343855 Phaseolus vulgaris
Phvul.001G049500 10.0kb downstream 10.0kb downstream 10000 false Chr01: 5333856-5343855 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303624 5265 Fabidae View MSA
124073183 5270 Rosid View MSA
123742641 5271 Pentapetalae View MSA
122790177 5272 Eudicot View MSA
122041646 5273 Angiosperm View MSA
121347886 5274 Embryophyte View MSA
123424828 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.8786 0.0 36.0059   Low
cufflinks 17.5855 0.0 45.4907    
cufflinks 16.5476 0.0 42.8161    
cufflinks 12.569 0.0 32.8186   Low
cufflinks 17.9912 0.0 46.5257    
cufflinks 14.2182 0.0 36.9259    
cufflinks 20.1356 0.0 52.0521    
cufflinks 21.9609 0.0 56.8267    
cufflinks 27.4775 0.0 71.358   High
cufflinks 37.2142 0.0 97.9171 High High
cufflinks 20.9598 0.0 54.1787    

0 Strain