Gene : Phvul.001G052500 P. vulgaris v2.1
Defline:  (1 of 1) PTHR12446//PTHR12446:SF27 - TESMIN/TSO1-RELATED // SUBFAMILY NOT NAMED Genomic Order:  531
Name:  ? Phvul.001G052500 Secondary Identifier:  ? PAC:37168941
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G052500 0.5kb upstream 0.5kb upstream 5292 true Chr01: 5760228-5765519 Phaseolus vulgaris
Phvul.001G052500 0.5kb upstream 0.5kb upstream 500 false Chr01: 5760228-5760727 Phaseolus vulgaris
Phvul.001G052500 0.5kb downstream 0.5kb downstream 5292 true Chr01: 5760728-5766019 Phaseolus vulgaris
Phvul.001G052500 0.5kb downstream 0.5kb downstream 500 false Chr01: 5765520-5766019 Phaseolus vulgaris
Phvul.001G052500 1.0kb upstream 1.0kb upstream 5792 true Chr01: 5759728-5765519 Phaseolus vulgaris
Phvul.001G052500 1.0kb upstream 1.0kb upstream 1000 false Chr01: 5759728-5760727 Phaseolus vulgaris
Phvul.001G052500 1.0kb downstream 1.0kb downstream 5792 true Chr01: 5760728-5766519 Phaseolus vulgaris
Phvul.001G052500 1.0kb downstream 1.0kb downstream 1000 false Chr01: 5765520-5766519 Phaseolus vulgaris
Phvul.001G052500 2.0kb upstream 2.0kb upstream 6792 true Chr01: 5758728-5765519 Phaseolus vulgaris
Phvul.001G052500 2.0kb upstream 2.0kb upstream 2000 false Chr01: 5758728-5760727 Phaseolus vulgaris
Phvul.001G052500 2.0kb downstream 2.0kb downstream 6792 true Chr01: 5760728-5767519 Phaseolus vulgaris
Phvul.001G052500 2.0kb downstream 2.0kb downstream 2000 false Chr01: 5765520-5767519 Phaseolus vulgaris
Phvul.001G052500 5.0kb upstream 5.0kb upstream 9792 true Chr01: 5755728-5765519 Phaseolus vulgaris
Phvul.001G052500 5.0kb upstream 5.0kb upstream 5000 false Chr01: 5755728-5760727 Phaseolus vulgaris
Phvul.001G052500 5.0kb downstream 5.0kb downstream 9792 true Chr01: 5760728-5770519 Phaseolus vulgaris
Phvul.001G052500 5.0kb downstream 5.0kb downstream 5000 false Chr01: 5765520-5770519 Phaseolus vulgaris
Phvul.001G052500 10.0kb upstream 10.0kb upstream 14792 true Chr01: 5750728-5765519 Phaseolus vulgaris
Phvul.001G052500 10.0kb upstream 10.0kb upstream 10000 false Chr01: 5750728-5760727 Phaseolus vulgaris
Phvul.001G052500 10.0kb downstream 10.0kb downstream 14792 true Chr01: 5760728-5775519 Phaseolus vulgaris
Phvul.001G052500 10.0kb downstream 10.0kb downstream 10000 false Chr01: 5765520-5775519 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121791811 5273 Angiosperm View MSA
122310012 5265 Fabidae View MSA
124037418 5270 Rosid View MSA
123742291 5271 Pentapetalae View MSA
122794076 5272 Eudicot View MSA
121349909 5274 Embryophyte View MSA
123426596 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0140271 0.0 0.0695185 Low Low
cufflinks 0.0407715 0.0 0.181454 Low  
cufflinks 0.0494047 0.0 0.215329 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0259503 0.0 0.121851 Low  
cufflinks 0.0923668 0.0 0.380959 Low High
cufflinks 0.0480098 0.0 0.210024 Low  
cufflinks 0.0457734 0.0 0.200427 Low  
cufflinks 0.0517584 0.0 0.224784 Low  
cufflinks 0.00760449 0.0 0.0406756 Low Low
cufflinks 0.0457052 0.0 0.202213 Low  

0 Strain