Gene : Phvul.001G051800 P. vulgaris v2.1
Defline:  (1 of 79) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  523
Name:  ? Phvul.001G051800 Secondary Identifier:  ? PAC:37171230
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G051800 0.5kb upstream 0.5kb upstream 7697 true Chr01: 5644464-5652160 Phaseolus vulgaris
Phvul.001G051800 0.5kb upstream 0.5kb upstream 500 false Chr01: 5651661-5652160 Phaseolus vulgaris
Phvul.001G051800 0.5kb downstream 0.5kb downstream 7697 true Chr01: 5643964-5651660 Phaseolus vulgaris
Phvul.001G051800 0.5kb downstream 0.5kb downstream 500 false Chr01: 5643964-5644463 Phaseolus vulgaris
Phvul.001G051800 1.0kb upstream 1.0kb upstream 8197 true Chr01: 5644464-5652660 Phaseolus vulgaris
Phvul.001G051800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 5651661-5652660 Phaseolus vulgaris
Phvul.001G051800 1.0kb downstream 1.0kb downstream 8197 true Chr01: 5643464-5651660 Phaseolus vulgaris
Phvul.001G051800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 5643464-5644463 Phaseolus vulgaris
Phvul.001G051800 2.0kb upstream 2.0kb upstream 9197 true Chr01: 5644464-5653660 Phaseolus vulgaris
Phvul.001G051800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 5651661-5653660 Phaseolus vulgaris
Phvul.001G051800 2.0kb downstream 2.0kb downstream 9197 true Chr01: 5642464-5651660 Phaseolus vulgaris
Phvul.001G051800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 5642464-5644463 Phaseolus vulgaris
Phvul.001G051800 5.0kb upstream 5.0kb upstream 12197 true Chr01: 5644464-5656660 Phaseolus vulgaris
Phvul.001G051800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 5651661-5656660 Phaseolus vulgaris
Phvul.001G051800 5.0kb downstream 5.0kb downstream 12197 true Chr01: 5639464-5651660 Phaseolus vulgaris
Phvul.001G051800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 5639464-5644463 Phaseolus vulgaris
Phvul.001G051800 10.0kb upstream 10.0kb upstream 17197 true Chr01: 5644464-5661660 Phaseolus vulgaris
Phvul.001G051800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 5651661-5661660 Phaseolus vulgaris
Phvul.001G051800 10.0kb downstream 10.0kb downstream 17197 true Chr01: 5634464-5651660 Phaseolus vulgaris
Phvul.001G051800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 5634464-5644463 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301504 5265 Fabidae View MSA
124072779 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.40529 0.0 4.45259    
cufflinks 1.63334 0.0 5.08884    
cufflinks 0.585903 0.0 2.05175   Low
cufflinks 1.26476 0.0 4.06384    
cufflinks 1.51407 0.0 4.75672    
cufflinks 1.24482 0.0 3.99648    
cufflinks 1.1209 0.0 3.62132    
cufflinks 1.44149 0.0 4.55615    
cufflinks 1.38567 0.0 4.38308    
cufflinks 1.33682 0.0 4.26328    
cufflinks 1.73048 0.0 5.34084   High

0 Strain