Gene : Phvul.001G054200 P. vulgaris v2.1
Defline:  (1 of 3) K02913 - large subunit ribosomal protein L33 (RP-L33, MRPL33, rpmG) Genomic Order:  549
Name:  ? Phvul.001G054200 Secondary Identifier:  ? PAC:37170655
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G054200 0.5kb upstream 0.5kb upstream 1735 true Chr01: 5998248-5999982 Phaseolus vulgaris
Phvul.001G054200 0.5kb upstream 0.5kb upstream 500 false Chr01: 5998248-5998747 Phaseolus vulgaris
Phvul.001G054200 0.5kb downstream 0.5kb downstream 1735 true Chr01: 5998748-6000482 Phaseolus vulgaris
Phvul.001G054200 0.5kb downstream 0.5kb downstream 500 false Chr01: 5999983-6000482 Phaseolus vulgaris
Phvul.001G054200 1.0kb upstream 1.0kb upstream 2235 true Chr01: 5997748-5999982 Phaseolus vulgaris
Phvul.001G054200 1.0kb upstream 1.0kb upstream 1000 false Chr01: 5997748-5998747 Phaseolus vulgaris
Phvul.001G054200 1.0kb downstream 1.0kb downstream 2235 true Chr01: 5998748-6000982 Phaseolus vulgaris
Phvul.001G054200 1.0kb downstream 1.0kb downstream 1000 false Chr01: 5999983-6000982 Phaseolus vulgaris
Phvul.001G054200 2.0kb upstream 2.0kb upstream 3235 true Chr01: 5996748-5999982 Phaseolus vulgaris
Phvul.001G054200 2.0kb upstream 2.0kb upstream 2000 false Chr01: 5996748-5998747 Phaseolus vulgaris
Phvul.001G054200 2.0kb downstream 2.0kb downstream 3235 true Chr01: 5998748-6001982 Phaseolus vulgaris
Phvul.001G054200 2.0kb downstream 2.0kb downstream 2000 false Chr01: 5999983-6001982 Phaseolus vulgaris
Phvul.001G054200 5.0kb upstream 5.0kb upstream 6235 true Chr01: 5993748-5999982 Phaseolus vulgaris
Phvul.001G054200 5.0kb upstream 5.0kb upstream 5000 false Chr01: 5993748-5998747 Phaseolus vulgaris
Phvul.001G054200 5.0kb downstream 5.0kb downstream 6235 true Chr01: 5998748-6004982 Phaseolus vulgaris
Phvul.001G054200 5.0kb downstream 5.0kb downstream 5000 false Chr01: 5999983-6004982 Phaseolus vulgaris
Phvul.001G054200 10.0kb upstream 10.0kb upstream 11235 true Chr01: 5988748-5999982 Phaseolus vulgaris
Phvul.001G054200 10.0kb upstream 10.0kb upstream 10000 false Chr01: 5988748-5998747 Phaseolus vulgaris
Phvul.001G054200 10.0kb downstream 10.0kb downstream 11235 true Chr01: 5998748-6009982 Phaseolus vulgaris
Phvul.001G054200 10.0kb downstream 10.0kb downstream 10000 false Chr01: 5999983-6009982 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026232 5273 Angiosperm View MSA
122305368 5265 Fabidae View MSA
124037177 5270 Rosid View MSA
123743240 5271 Pentapetalae View MSA
122789761 5272 Eudicot View MSA
121345561 5274 Embryophyte View MSA
123425406 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 24.8412 0.0 76.0941   High
cufflinks 15.5387 0.0 50.3798    
cufflinks 15.8604 0.0 51.1592    
cufflinks 15.824 0.0 50.9538    
cufflinks 15.51 0.0 50.6481    
cufflinks 11.6876 0.0 39.1004    
cufflinks 11.4988 0.0 38.5556    
cufflinks 13.3557 0.0 43.851    
cufflinks 15.0066 0.0 48.7732    
cufflinks 10.4719 0.0 35.7836   Low
cufflinks 13.1076 0.0 43.4823    

0 Strain