Gene : Phvul.001G054900 P. vulgaris v2.1
Defline:  (1 of 4) PTHR10209//PTHR10209:SF119 - OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  556
Name:  ? Phvul.001G054900 Secondary Identifier:  ? PAC:37169426
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G054900 0.5kb upstream 0.5kb upstream 2050 true Chr01: 6146862-6148911 Phaseolus vulgaris
Phvul.001G054900 0.5kb upstream 0.5kb upstream 500 false Chr01: 6146862-6147361 Phaseolus vulgaris
Phvul.001G054900 0.5kb downstream 0.5kb downstream 2050 true Chr01: 6147362-6149411 Phaseolus vulgaris
Phvul.001G054900 0.5kb downstream 0.5kb downstream 500 false Chr01: 6148912-6149411 Phaseolus vulgaris
Phvul.001G054900 1.0kb upstream 1.0kb upstream 2550 true Chr01: 6146362-6148911 Phaseolus vulgaris
Phvul.001G054900 1.0kb upstream 1.0kb upstream 1000 false Chr01: 6146362-6147361 Phaseolus vulgaris
Phvul.001G054900 1.0kb downstream 1.0kb downstream 2550 true Chr01: 6147362-6149911 Phaseolus vulgaris
Phvul.001G054900 1.0kb downstream 1.0kb downstream 1000 false Chr01: 6148912-6149911 Phaseolus vulgaris
Phvul.001G054900 2.0kb upstream 2.0kb upstream 3550 true Chr01: 6145362-6148911 Phaseolus vulgaris
Phvul.001G054900 2.0kb upstream 2.0kb upstream 2000 false Chr01: 6145362-6147361 Phaseolus vulgaris
Phvul.001G054900 2.0kb downstream 2.0kb downstream 3550 true Chr01: 6147362-6150911 Phaseolus vulgaris
Phvul.001G054900 2.0kb downstream 2.0kb downstream 2000 false Chr01: 6148912-6150911 Phaseolus vulgaris
Phvul.001G054900 5.0kb upstream 5.0kb upstream 6550 true Chr01: 6142362-6148911 Phaseolus vulgaris
Phvul.001G054900 5.0kb upstream 5.0kb upstream 5000 false Chr01: 6142362-6147361 Phaseolus vulgaris
Phvul.001G054900 5.0kb downstream 5.0kb downstream 6550 true Chr01: 6147362-6153911 Phaseolus vulgaris
Phvul.001G054900 5.0kb downstream 5.0kb downstream 5000 false Chr01: 6148912-6153911 Phaseolus vulgaris
Phvul.001G054900 10.0kb upstream 10.0kb upstream 11550 true Chr01: 6137362-6148911 Phaseolus vulgaris
Phvul.001G054900 10.0kb upstream 10.0kb upstream 10000 false Chr01: 6137362-6147361 Phaseolus vulgaris
Phvul.001G054900 10.0kb downstream 10.0kb downstream 11550 true Chr01: 6147362-6158911 Phaseolus vulgaris
Phvul.001G054900 10.0kb downstream 10.0kb downstream 10000 false Chr01: 6148912-6158911 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122250876 5265 Fabidae Singleton cluster - no MSA
124051346 5270 Rosid View MSA
123752676 5271 Pentapetalae View MSA
122774719 5272 Eudicot View MSA
122051611 5273 Angiosperm View MSA
123429101 5275 Viridiplantae View MSA
121351374 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.71171 0.0 5.77784    
cufflinks 0.632849 0.0 2.35589    
cufflinks 1.48687 0.0 5.07328    
cufflinks 0.601453 0.0 2.26648    
cufflinks 2.89079 0.0 9.28497    
cufflinks 0.617993 0.0 2.30213    
cufflinks 0.0296708 0.0 0.145313 Low Low
cufflinks 1.0705 0.0 3.7904    
cufflinks 0.0325771 0.0 0.158232 Low Low
cufflinks 2.79622 0.0 8.95823    
cufflinks 2.823 0.0 9.03868    

0 Strain